Difference between revisions of "TSS:Hg 100316.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|CAAP= | |CAAP= | ||
| − | |all_trans=BC071953:8 HQ447530:19 AB590748:19 CU687198:19 ENST00000483493.6:-21 | + | |all_trans=BC071953:8 HQ447530:19 AB590748:19 CU687198:19 ENST00000483493.6:-21 ENST00000650615.1:-26 ENST00000333916.8:-36 NM_024828:-36 AK023719:-36 ENST00000520187.1:-37 BC014658:-38 NM_001167575:-62 ENST00000495958.5:131 ENST00000625311.1:293 AK300739:293 AK301673:363 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=8 | |distance=8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=52 |
|end=26892766 | |end=26892766 | ||
|end_of_center_position=26892751 | |end_of_center_position=26892751 | ||
|entrez_id=79886 | |entrez_id=79886 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=C9orf82 | + | |gene_alias=C9orf82|CAAP |
|gene_description=caspase activity and apoptosis inhibitor 1 | |gene_description=caspase activity and apoptosis inhibitor 1 | ||
|gene_id=79886 | |gene_id=79886 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:25834 | |hgnc_mgi_id=HGNC:25834 | ||
|nearest_ensembl=ENSG00000120159 | |nearest_ensembl=ENSG00000120159 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_024828 |
|nearest_refseq=NM_024828 | |nearest_refseq=NM_024828 | ||
|nearest_unigene=Hs.178357 | |nearest_unigene=Hs.178357 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=26892734 | |start=26892734 | ||
Revision as of 14:22, 14 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 26892750 |
|---|---|
| End of the center position in the TSS region: | 26892751 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC071953 |
|---|---|
| Distance: | 8 |
| Num_trans: | 16 |
| All_trans: | BC071953:8 HQ447530:19 AB590748:19 CU687198:19 ENST00000483493.6:-21 ENST00000650615.1:-26 ENST00000333916.8:-36 NM_024828:-36 AK023719:-36 ENST00000520187.1:-37 BC014658:-38 NM_001167575:-62 ENST00000495958.5:131 ENST00000625311.1:293 AK300739:293 AK301673:363 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NM_024828 |
| Entrez ID: | 79886 |
| Nearest Unigene: | Hs.178357 |
| Nearest Refseq: | NM_024828 |
| Nearest Ensembl: | ENSG00000120159 |
| Gene Name: | caspase activity and apoptosis inhibitor 1 |
| Gene Alias: | C9orf82 |
| Gene Description: | caspase activity and apoptosis inhibitor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
