Difference between revisions of "TSS:Hg 100387.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RLR-1= | |RLR-1= | ||
|SGMRT2= | |SGMRT2= | ||
| − | |all_trans=AB385150:8 AK315040:-12 AK301678:-12 | + | |all_trans=AB385150:8 ENST00000680883.1:11 ENST00000679662.1:11 AK315040:-12 AK301678:-12 ENST00000379883.3:-13 ENST00000379868.6:-13 ENST00000680733.1:-13 ENST00000679859.1:-13 NM_014314:-13 BX647917:-13 ENST00000679771.1:-25 BC070029:-25 BC132786:-89 BC136610:-89 LF383856:-141 MA619433:-141 AF038963:-141 LQ878892:-141 BC107731:-160 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=8 | |distance=8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=17 |
|end=32526183 | |end=32526183 | ||
|end_of_center_position=32526179 | |end_of_center_position=32526179 | ||
|entrez_id=23586 | |entrez_id=23586 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=RIG-I | + | |gene_alias=RIG-I|RIG1|RIGI|RLR-1|SGMRT2 |
|gene_description=DExD/H-box helicase 58 | |gene_description=DExD/H-box helicase 58 | ||
|gene_id=23586 | |gene_id=23586 | ||
| − | |gene_name= | + | |gene_name=DExD/H-box helicase 58 |
|gene_source=HGNC:19102 | |gene_source=HGNC:19102 | ||
|gene_symbol=DDX58 | |gene_symbol=DDX58 | ||
| − | |gene_synonyms=DKFZp434J1111 FLJ13599 RIG-I | + | |gene_synonyms=DKFZp434J1111 FLJ13599 RIG-1 RIG-I RIG1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:19102 | |hgnc_mgi_id=HGNC:19102 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_014314 | |nearest_refseq=NM_014314 | ||
|nearest_unigene=Hs.190622 | |nearest_unigene=Hs.190622 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=32526174 | |start=32526174 | ||
|start_of_center_position=32526178 | |start_of_center_position=32526178 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-50(CGGCTTTAAAGC,-,0.00) |
|transcript_name=AB385150 | |transcript_name=AB385150 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 15:18, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 32526178 |
|---|---|
| End of the center position in the TSS region: | 32526179 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB385150 |
|---|---|
| Distance: | 8 |
| Num_trans: | 20 |
| All_trans: | AB385150:8 ENST00000680883.1:11 ENST00000679662.1:11 AK315040:-12 AK301678:-12 ENST00000379883.3:-13 ENST00000379868.6:-13 ENST00000680733.1:-13 ENST00000679859.1:-13 NM_014314:-13 BX647917:-13 ENST00000679771.1:-25 BC070029:-25 BC132786:-89 BC136610:-89 LF383856:-141 MA619433:-141 AF038963:-141 LQ878892:-141 BC107731:-160 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_014314 |
| Entrez ID: | 23586 |
| Nearest Unigene: | Hs.190622 |
| Nearest Refseq: | NM_014314 |
| Nearest Ensembl: | ENSG00000107201 |
| Gene Name: | DExD/H-box helicase 58 |
| Gene Alias: | RIG-I |
| Gene Description: | DExD/H-box helicase 58 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -50(CGGCTTTAAAGC,-,0.00) |
