Difference between revisions of "TSS:Hg 100408.1"
From referenceTSS
| Line 7: | Line 7: | ||
|HSPF4= | |HSPF4= | ||
|NEDD7= | |NEDD7= | ||
| − | |all_trans= | + | |all_trans=ENST00000673360.1:0 ENST00000485479.6:0 ENST00000673248.1:0 LF354214:0 MA589791:0 ENST00000460940.6:-20 ENST00000495360.6:-20 ENST00000473270.1:-28 ENST00000436040.7:-36 NM_001368999:-38 NM_001368997:-38 NM_001368996:-38 NM_001368995:-38 NM_001369003:-38 NM_001369002:-38 NM_001369001:-38 NM_001369000:-38 NR_160928:-38 NR_160927:-38 NR_160926:-38 NR_160925:-38 NR_160924:-38 NR_160923:-38 NR_160922:-38 NR_160929:-38 ENST00000673487.1:-48 ENST00000489583.1:68 ENST00000482687.6:80 ENST00000468275.6:185 ENST00000467331.6:203 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=52 |
|end=33025082 | |end=33025082 | ||
|end_of_center_position=33025069 | |end_of_center_position=33025069 | ||
| − | |entrez_id= | + | |entrez_id=54840 |
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias= | + | |gene_alias=AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT |
| − | |gene_description= | + | |gene_description=aprataxin |
|gene_id=54840 | |gene_id=54840 | ||
|gene_name=aprataxin | |gene_name=aprataxin | ||
| Line 26: | Line 26: | ||
|hDJ-2= | |hDJ-2= | ||
|hgnc_mgi_id=HGNC:15984 | |hgnc_mgi_id=HGNC:15984 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000137074 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001368999 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_017692 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.20158 |
| − | |num_trans= | + | |num_trans=30 |
|species=human | |species=human | ||
|start=33025054 | |start=33025054 | ||
|start_of_center_position=33025068 | |start_of_center_position=33025068 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000673360.1 ENST00000485479.6 ENST00000673248.1 LF354214 MA589791 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100408.1 | |tss_id=hg_100408.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=F8WBM3 Q7Z2E3 |
}} | }} | ||
Revision as of 15:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33025068 |
|---|---|
| End of the center position in the TSS region: | 33025069 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000673360.1 ENST00000485479.6 ENST00000673248.1 LF354214 MA589791 |
|---|---|
| Distance: | 0 |
| Num_trans: | 30 |
| All_trans: | ENST00000673360.1:0 ENST00000485479.6:0 ENST00000673248.1:0 LF354214:0 MA589791:0 ENST00000460940.6:-20 ENST00000495360.6:-20 ENST00000473270.1:-28 ENST00000436040.7:-36 NM_001368999:-38 NM_001368997:-38 NM_001368996:-38 NM_001368995:-38 NM_001369003:-38 NM_001369002:-38 NM_001369001:-38 NM_001369000:-38 NR_160928:-38 NR_160927:-38 NR_160926:-38 NR_160925:-38 NR_160924:-38 NR_160923:-38 NR_160922:-38 NR_160929:-38 ENST00000673487.1:-48 ENST00000489583.1:68 ENST00000482687.6:80 ENST00000468275.6:185 ENST00000467331.6:203 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NM_001368999 |
| Entrez ID: | 54840 |
| Nearest Unigene: | Hs.20158 |
| Nearest Refseq: | NM_017692 |
| Nearest Ensembl: | ENSG00000137074 |
| Gene Name: | aprataxin |
| Gene Alias: | AOA |
| Gene Description: | aprataxin |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
