Difference between revisions of "TSS:Hg 100409.1"
From referenceTSS
| Line 7: | Line 7: | ||
|HSPF4= | |HSPF4= | ||
|NEDD7= | |NEDD7= | ||
| − | |all_trans= | + | |all_trans=ENST00000436040.7:0 ENST00000673487.1:0 ENST00000460940.6:0 ENST00000495360.6:0 ENST00000473270.1:0 NM_001368999:0 NM_001368997:0 NM_001368996:0 NM_001368995:0 NM_001369003:0 NM_001369002:0 NM_001369001:0 NM_001369000:0 NR_160928:0 NR_160927:0 NR_160926:0 NR_160925:0 NR_160924:0 NR_160923:0 NR_160922:0 NR_160929:0 LF354214:8 MA589791:8 ENST00000485479.6:24 ENST00000673248.1:24 ENST00000673360.1:27 ENST00000489583.1:102 ENST00000482687.6:114 ENST00000468275.6:219 ENST00000467331.6:237 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=33025147 | |end=33025147 | ||
|end_of_center_position=33025118 | |end_of_center_position=33025118 | ||
| − | |entrez_id= | + | |entrez_id=54840 |
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias= | + | |gene_alias=AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT |
| − | |gene_description= | + | |gene_description=aprataxin |
|gene_id=54840 | |gene_id=54840 | ||
|gene_name=aprataxin | |gene_name=aprataxin | ||
| Line 26: | Line 26: | ||
|hDJ-2= | |hDJ-2= | ||
|hgnc_mgi_id=HGNC:15984 | |hgnc_mgi_id=HGNC:15984 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000137074 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001368999 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_017692 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.20158 |
| − | |num_trans= | + | |num_trans=30 |
|species=human | |species=human | ||
|start=33025088 | |start=33025088 | ||
|start_of_center_position=33025117 | |start_of_center_position=33025117 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000436040.7 ENST00000673487.1 ENST00000460940.6 ENST00000495360.6 ENST00000473270.1 NM_001368999 NM_001368997 NM_001368996 NM_001368995 NM_001369003 NM_001369002 NM_001369001 NM_001369000 NR_160928 NR_160927 NR_160926 NR_160925 NR_160924 NR_160923 NR_160922 NR_160929 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100409.1 | |tss_id=hg_100409.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q7Z2E3 | + | |uniprot_id=A0A5K1VW80 Q7Z2E3 |
}} | }} | ||
Revision as of 15:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33025117 |
|---|---|
| End of the center position in the TSS region: | 33025118 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000436040.7 ENST00000673487.1 ENST00000460940.6 ENST00000495360.6 ENST00000473270.1 NM_001368999 NM_001368997 NM_001368996 NM_001368995 NM_001369003 NM_001369002 NM_001369001 NM_001369000 NR_160928 NR_160927 NR_160926 NR_160925 NR_160924 NR_160923 NR_160922 NR_160929 |
|---|---|
| Distance: | 0 |
| Num_trans: | 30 |
| All_trans: | ENST00000436040.7:0 ENST00000673487.1:0 ENST00000460940.6:0 ENST00000495360.6:0 ENST00000473270.1:0 NM_001368999:0 NM_001368997:0 NM_001368996:0 NM_001368995:0 NM_001369003:0 NM_001369002:0 NM_001369001:0 NM_001369000:0 NR_160928:0 NR_160927:0 NR_160926:0 NR_160925:0 NR_160924:0 NR_160923:0 NR_160922:0 NR_160929:0 LF354214:8 MA589791:8 ENST00000485479.6:24 ENST00000673248.1:24 ENST00000673360.1:27 ENST00000489583.1:102 ENST00000482687.6:114 ENST00000468275.6:219 ENST00000467331.6:237 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_001368999 |
| Entrez ID: | 54840 |
| Nearest Unigene: | Hs.20158 |
| Nearest Refseq: | NM_017692 |
| Nearest Ensembl: | ENSG00000137074 |
| Gene Name: | aprataxin |
| Gene Alias: | AOA |
| Gene Description: | aprataxin |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
