Difference between revisions of "TSS:Hg 243231.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SGK2= | |SGK2= | ||
|SGKL= | |SGKL= | ||
| − | |all_trans= | + | |all_trans=ENST00000673487.1:165 NM_001368999:175 NM_001368997:175 NM_001368996:175 NM_001368995:175 NM_001369003:175 NM_001369002:175 NM_001369001:175 NM_001369000:175 NR_160928:175 NR_160927:175 NR_160926:175 NR_160925:175 NR_160924:175 NR_160923:175 NR_160922:175 NR_160929:175 ENST00000436040.7:177 ENST00000473270.1:185 ENST00000460940.6:193 ENST00000495360.6:193 LF354214:214 MA589791:214 ENST00000485479.6:230 ENST00000673248.1:230 ENST00000673360.1:233 ENST00000489583.1:308 ENST00000482687.6:320 LF206416:-355 MA441993:-355 ENST00000468275.6:425 ENST00000467331.6:443 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=165 |
| − | |distance_to_tss=- | + | |distance_to_tss=-399 |
|end=66712382 | |end=66712382 | ||
|end_of_center_position=33025302 | |end_of_center_position=33025302 | ||
|entrez_id=23678 | |entrez_id=23678 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=CISK | + | |gene_alias=CISK{{!}}SGK2{{!}}SGKL |
|gene_description=serum/glucocorticoid regulated kinase family member 3 | |gene_description=serum/glucocorticoid regulated kinase family member 3 | ||
| − | |gene_id= | + | |gene_id=54840 |
| − | |gene_name= | + | |gene_name=aprataxin |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:15984 |
| − | |gene_symbol= | + | |gene_symbol=APTX |
| − | |gene_synonyms= | + | |gene_synonyms=AOA AOA1 EAOH EOAHA FLJ20157 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:15984 |
|nearest_ensembl=ENSG00000104205 | |nearest_ensembl=ENSG00000104205 | ||
|nearest_promoter_id=NM_001033578 | |nearest_promoter_id=NM_001033578 | ||
|nearest_refseq=NM_013257 | |nearest_refseq=NM_013257 | ||
|nearest_unigene=Hs.613417 | |nearest_unigene=Hs.613417 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
|start=66712381 | |start=66712381 | ||
|start_of_center_position=33025301 | |start_of_center_position=33025301 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000673487.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243231.1 | |tss_id=hg_243231.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q7Z2E3 |
}} | }} | ||
Revision as of 16:34, 17 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 33025301 |
|---|---|
| End of the center position in the TSS region: | 33025302 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000673487.1 |
|---|---|
| Distance: | 165 |
| Num_trans: | 32 |
| All_trans: | ENST00000673487.1:165 NM_001368999:175 NM_001368997:175 NM_001368996:175 NM_001368995:175 NM_001369003:175 NM_001369002:175 NM_001369001:175 NM_001369000:175 NR_160928:175 NR_160927:175 NR_160926:175 NR_160925:175 NR_160924:175 NR_160923:175 NR_160922:175 NR_160929:175 ENST00000436040.7:177 ENST00000473270.1:185 ENST00000460940.6:193 ENST00000495360.6:193 LF354214:214 MA589791:214 ENST00000485479.6:230 ENST00000673248.1:230 ENST00000673360.1:233 ENST00000489583.1:308 ENST00000482687.6:320 LF206416:-355 MA441993:-355 ENST00000468275.6:425 ENST00000467331.6:443 |
TATA-Box annotation
| Distance to TSS: | -399 |
|---|---|
| Nearest PromoterID: | NM_001033578 |
| Entrez ID: | 23678 |
| Nearest Unigene: | Hs.613417 |
| Nearest Refseq: | NM_013257 |
| Nearest Ensembl: | ENSG00000104205 |
| Gene Name: | aprataxin |
| Gene Alias: | CISK|SGK2|SGKL |
| Gene Description: | serum/glucocorticoid regulated kinase family member 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
