Difference between revisions of "TSS:Hg 100442.1"
From referenceTSS
| Line 4: | Line 4: | ||
|GT1= | |GT1= | ||
|GTB= | |GTB= | ||
| − | |all_trans=M22921:22 U10474:22 D29805:25 X13223:25 X14085:25 HG765099:55 HG765101:55 AK312797:61 | + | |all_trans=M22921:22 U10474:22 D29805:25 X13223:25 X14085:25 HG765099:55 HG765101:55 AK312797:61 ENST00000379731.5:-68 NM_001378497:-68 NM_001497:-68 NM_001378496:-68 AK296928:72 ENST00000535206.5:-88 BC045773:-88 KJ901453:89 X55415:89 AB590749:89 NM_001378495:99 AK316294:110 U10473:433 |
|beta4Gal-T1= | |beta4Gal-T1= | ||
|chr=chr9 | |chr=chr9 | ||
| Line 14: | Line 14: | ||
|entrez_id=2683 | |entrez_id=2683 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=B4GAL-T1 | + | |gene_alias=B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 |
| − | |gene_description= | + | |gene_description=beta-1,4-galactosyltransferase 1 |
|gene_id=2683 | |gene_id=2683 | ||
| − | |gene_name= | + | |gene_name=beta-1,4-galactosyltransferase 1 |
|gene_source=HGNC:924 | |gene_source=HGNC:924 | ||
|gene_symbol=B4GALT1 | |gene_symbol=B4GALT1 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_001497 | |nearest_refseq=NM_001497 | ||
|nearest_unigene=Hs.272011 | |nearest_unigene=Hs.272011 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=33167257 | |start=33167257 | ||
|start_of_center_position=33167262 | |start_of_center_position=33167262 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=71(CTTCTTAAAGCG,+,0.00) |
|transcript_name=M22921 U10474 | |transcript_name=M22921 U10474 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 15:19, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33167262 |
|---|---|
| End of the center position in the TSS region: | 33167263 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | M22921 U10474 |
|---|---|
| Distance: | 22 |
| Num_trans: | 21 |
| All_trans: | M22921:22 U10474:22 D29805:25 X13223:25 X14085:25 HG765099:55 HG765101:55 AK312797:61 ENST00000379731.5:-68 NM_001378497:-68 NM_001497:-68 NM_001378496:-68 AK296928:72 ENST00000535206.5:-88 BC045773:-88 KJ901453:89 X55415:89 AB590749:89 NM_001378495:99 AK316294:110 U10473:433 |
TATA-Box annotation
| Distance to TSS: | 95 |
|---|---|
| Nearest PromoterID: | NM_001497 |
| Entrez ID: | 2683 |
| Nearest Unigene: | Hs.272011 |
| Nearest Refseq: | NM_001497 |
| Nearest Ensembl: | ENSG00000086062 |
| Gene Name: | beta-1,4-galactosyltransferase 1 |
| Gene Alias: | B4GAL-T1 |
| Gene Description: | beta-1,4-galactosyltransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 71(CTTCTTAAAGCG,+,0.00) |
