Difference between revisions of "TSS:Hg 100443.1"
From referenceTSS
| Line 4: | Line 4: | ||
|GT1= | |GT1= | ||
|GTB= | |GTB= | ||
| − | |all_trans= | + | |all_trans=ENST00000379731.5:-27 NM_001378497:-27 NM_001497:-27 NM_001378496:-27 ENST00000535206.5:-47 BC045773:-47 M22921:60 U10474:60 D29805:63 X13223:63 X14085:63 HG765099:93 HG765101:93 AK312797:99 AK296928:110 KJ901453:127 X55415:127 AB590749:127 NM_001378495:137 AK316294:148 U10473:471 |
|beta4Gal-T1= | |beta4Gal-T1= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance=- | + | |distance=-27 |
|distance_to_tss=56 | |distance_to_tss=56 | ||
|end=33167309 | |end=33167309 | ||
| Line 14: | Line 14: | ||
|entrez_id=2683 | |entrez_id=2683 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=B4GAL-T1 | + | |gene_alias=B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 |
| − | |gene_description= | + | |gene_description=beta-1,4-galactosyltransferase 1 |
|gene_id=2683 | |gene_id=2683 | ||
| − | |gene_name= | + | |gene_name=beta-1,4-galactosyltransferase 1 |
|gene_source=HGNC:924 | |gene_source=HGNC:924 | ||
|gene_symbol=B4GALT1 | |gene_symbol=B4GALT1 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_001497 | |nearest_refseq=NM_001497 | ||
|nearest_unigene=Hs.272011 | |nearest_unigene=Hs.272011 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=33167295 | |start=33167295 | ||
|start_of_center_position=33167302 | |start_of_center_position=33167302 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000379731.5 NM_001378497 NM_001497 NM_001378496 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100443.1 | |tss_id=hg_100443.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P15291 | + | |uniprot_id=P15291 |
}} | }} | ||
Revision as of 15:20, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33167302 |
|---|---|
| End of the center position in the TSS region: | 33167303 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000379731.5 NM_001378497 NM_001497 NM_001378496 |
|---|---|
| Distance: | -27 |
| Num_trans: | 21 |
| All_trans: | ENST00000379731.5:-27 NM_001378497:-27 NM_001497:-27 NM_001378496:-27 ENST00000535206.5:-47 BC045773:-47 M22921:60 U10474:60 D29805:63 X13223:63 X14085:63 HG765099:93 HG765101:93 AK312797:99 AK296928:110 KJ901453:127 X55415:127 AB590749:127 NM_001378495:137 AK316294:148 U10473:471 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NM_001497 |
| Entrez ID: | 2683 |
| Nearest Unigene: | Hs.272011 |
| Nearest Refseq: | NM_001497 |
| Nearest Ensembl: | ENSG00000086062 |
| Gene Name: | beta-1,4-galactosyltransferase 1 |
| Gene Alias: | B4GAL-T1 |
| Gene Description: | beta-1,4-galactosyltransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
