Difference between revisions of "TSS:Hg 100544.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MIP3B= | |MIP3B= | ||
|SCYA19= | |SCYA19= | ||
| − | |all_trans=ENST00000311925. | + | |all_trans=ENST00000311925.7:0 NM_006274:0 AB000887:0 AK311945:0 BC027968:4 U88321:9 ENST00000378800.3:63 EU176240:126 DQ895236:126 AB590424:126 KJ892110:127 U77180:128 CR456868:128 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=34691281 | |end=34691281 | ||
|end_of_center_position=34691274 | |end_of_center_position=34691274 | ||
|entrez_id=6363 | |entrez_id=6363 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=CKb11 | + | |gene_alias=CKb11|ELC|MIP-3b|MIP3B|SCYA19 |
|gene_description=C-C motif chemokine ligand 19 | |gene_description=C-C motif chemokine ligand 19 | ||
|gene_id=6363 | |gene_id=6363 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_006274 | |nearest_refseq=NM_006274 | ||
|nearest_unigene=Hs.50002 | |nearest_unigene=Hs.50002 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=34691266 | |start=34691266 | ||
|start_of_center_position=34691273 | |start_of_center_position=34691273 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(GGCCATAAATAG,-,0.00),-32(CCATAAATAGGA,+,0.00) |
| − | |transcript_name=ENST00000311925. | + | |transcript_name=ENST00000311925.7 NM_006274 AB000887 AK311945 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100544.1 | |tss_id=hg_100544.1 | ||
Revision as of 15:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34691273 |
|---|---|
| End of the center position in the TSS region: | 34691274 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000311925.7 NM_006274 AB000887 AK311945 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000311925.7:0 NM_006274:0 AB000887:0 AK311945:0 BC027968:4 U88321:9 ENST00000378800.3:63 EU176240:126 DQ895236:126 AB590424:126 KJ892110:127 U77180:128 CR456868:128 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_006274 |
| Entrez ID: | 6363 |
| Nearest Unigene: | Hs.50002 |
| Nearest Refseq: | NM_006274 |
| Nearest Ensembl: | ENSG00000172724 |
| Gene Name: | C-C motif chemokine ligand 19 |
| Gene Alias: | CKb11 |
| Gene Description: | C-C motif chemokine ligand 19 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GGCCATAAATAG,-,0.00),-32(CCATAAATAGGA,+,0.00) |
