Difference between revisions of "TSS:Hg 100559.1"
From referenceTSS
| Line 6: | Line 6: | ||
|IBMPFD1= | |IBMPFD1= | ||
|TERA= | |TERA= | ||
| − | |all_trans=AK307735:0 ENST00000417448. | + | |all_trans=AK307735:0 ENST00000417448.2:-215 NM_001354928:-318 AB385152:-367 ENST00000679204.2:-452 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=331 |
|end=35071990 | |end=35071990 | ||
|end_of_center_position=35071977 | |end_of_center_position=35071977 | ||
|entrez_id=7415 | |entrez_id=7415 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias= | + | |gene_alias=CDC48|TERA|p97 |
|gene_description=valosin containing protein | |gene_description=valosin containing protein | ||
|gene_id=7415 | |gene_id=7415 | ||
| Line 21: | Line 21: | ||
|gene_source=HGNC:12666 | |gene_source=HGNC:12666 | ||
|gene_symbol=VCP | |gene_symbol=VCP | ||
| − | |gene_synonyms=IBMPFD p97 | + | |gene_synonyms=CDC48 IBMPFD TERA p97 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:12666 | |hgnc_mgi_id=HGNC:12666 | ||
|nearest_ensembl=ENSG00000165280 | |nearest_ensembl=ENSG00000165280 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001354928 |
|nearest_refseq=NM_007126 | |nearest_refseq=NM_007126 | ||
|nearest_unigene=Hs.529782 | |nearest_unigene=Hs.529782 | ||
| − | |num_trans= | + | |num_trans=5 |
|p97= | |p97= | ||
|species=human | |species=human | ||
Revision as of 15:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35071976 |
|---|---|
| End of the center position in the TSS region: | 35071977 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK307735 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | AK307735:0 ENST00000417448.2:-215 NM_001354928:-318 AB385152:-367 ENST00000679204.2:-452 |
TATA-Box annotation
| Distance to TSS: | 331 |
|---|---|
| Nearest PromoterID: | NM_001354928 |
| Entrez ID: | 7415 |
| Nearest Unigene: | Hs.529782 |
| Nearest Refseq: | NM_007126 |
| Nearest Ensembl: | ENSG00000165280 |
| Gene Name: | valosin containing protein |
| Gene Alias: | CDC48 |
| Gene Description: | valosin containing protein |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
