Difference between revisions of "TSS:Hg 232760.1"
From referenceTSS
| Line 6: | Line 6: | ||
|TIF1GAMMA= | |TIF1GAMMA= | ||
|TIFGAMMA= | |TIFGAMMA= | ||
| + | |all_trans=ENST00000369530.5:-3 ENST00000529046.5:13 ENST00000525970.5:13 ENST00000533818.5:13 ENST00000524652.1:13 ENST00000358528.9:16 NM_001007553:16 NM_007158:16 NM_001242892:16 NM_001242893:16 NM_001130523:16 ENST00000339438.10:17 BX648780:17 ENST00000534699.5:18 AK290146:18 CR749431:19 ENST00000261443.9:26 BC017662:26 BC032446:26 ENST00000530886.5:-27 ENST00000525132.1:31 AB020692:36 AF077054:43 AK022516:48 AK022528:48 ENST00000610726.4:-50 NM_001242891:-50 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-3 |
| − | |distance_to_tss= | + | |distance_to_tss=108339 |
|end=114402866 | |end=114402866 | ||
|end_of_center_position=114758000 | |end_of_center_position=114758000 | ||
|entrez_id=51592 | |entrez_id=51592 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=ECTO | + | |gene_alias=ECTO{{!}}PTC7{{!}}RFG7{{!}}TF1G{{!}}TIF1G{{!}}TIF1GAMMA{{!}}TIFGAMMA |
|gene_description=tripartite motif containing 33 | |gene_description=tripartite motif containing 33 | ||
| − | |gene_name= | + | |gene_id=7812 |
| + | |gene_name=cold shock domain containing E1 | ||
| + | |gene_source=HGNC:29905 | ||
| + | |gene_symbol=CSDE1 | ||
| + | |gene_synonyms=D1S155E UNR | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29905 | ||
|nearest_ensembl=ENSG00000197323 | |nearest_ensembl=ENSG00000197323 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_033020 |
|nearest_refseq=NM_015906 | |nearest_refseq=NM_015906 | ||
|nearest_unigene=Hs.26837 | |nearest_unigene=Hs.26837 | ||
| − | |num_trans= | + | |num_trans=27 |
|species=human | |species=human | ||
|start=114402861 | |start=114402861 | ||
|start_of_center_position=114757999 | |start_of_center_position=114757999 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000369530.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232760.1 | |tss_id=hg_232760.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=O75534 | ||
}} | }} | ||
Revision as of 12:32, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 114757999 |
|---|---|
| End of the center position in the TSS region: | 114758000 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000369530.5 |
|---|---|
| Distance: | -3 |
| Num_trans: | 27 |
| All_trans: | ENST00000369530.5:-3 ENST00000529046.5:13 ENST00000525970.5:13 ENST00000533818.5:13 ENST00000524652.1:13 ENST00000358528.9:16 NM_001007553:16 NM_007158:16 NM_001242892:16 NM_001242893:16 NM_001130523:16 ENST00000339438.10:17 BX648780:17 ENST00000534699.5:18 AK290146:18 CR749431:19 ENST00000261443.9:26 BC017662:26 BC032446:26 ENST00000530886.5:-27 ENST00000525132.1:31 AB020692:36 AF077054:43 AK022516:48 AK022528:48 ENST00000610726.4:-50 NM_001242891:-50 |
TATA-Box annotation
| Distance to TSS: | 108339 |
|---|---|
| Nearest PromoterID: | NM_033020 |
| Entrez ID: | 51592 |
| Nearest Unigene: | Hs.26837 |
| Nearest Refseq: | NM_015906 |
| Nearest Ensembl: | ENSG00000197323 |
| Gene Name: | cold shock domain containing E1 |
| Gene Alias: | ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA |
| Gene Description: | tripartite motif containing 33 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
