Difference between revisions of "TSS:Hg 100561.1"
From referenceTSS
| Line 6: | Line 6: | ||
|IBMPFD1= | |IBMPFD1= | ||
|TERA= | |TERA= | ||
| − | |all_trans= | + | |all_trans=ENST00000679902.1:0 ENST00000679800.1:0 ENST00000677257.1:0 ENST00000678465.1:0 ENST00000358901.11:0 ENST00000681335.1:0 ENST00000680916.1:0 ENST00000679599.1:0 ENST00000679862.1:0 ENST00000681690.1:0 ENST00000676836.2:0 ENST00000480327.2:0 ENST00000680079.1:0 ENST00000681386.1:0 ENST00000679392.1:0 ENST00000680575.1:0 ENST00000680108.1:0 NM_007126:0 BC096751:0 AK312310:0 BC012195:-5 BC017171:-5 BC021055:-5 ENST00000679647.1:-10 ENST00000678018.1:21 FJ224344:22 AF100752:22 FJ224352:22 ENST00000678650.1:28 ENST00000679901.1:28 ENST00000448530.6:-33 NM_001354927:-33 BC110913:37 ENST00000493886.5:40 BC122550:40 BC121794:40 LF211620:48 MA447197:48 ENST00000679204.2:147 AB385152:232 NM_001354928:281 ENST00000417448.2:384 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=13 |
|end=35072635 | |end=35072635 | ||
|end_of_center_position=35072612 | |end_of_center_position=35072612 | ||
|entrez_id=7415 | |entrez_id=7415 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias= | + | |gene_alias=CDC48|TERA|p97 |
|gene_description=valosin containing protein | |gene_description=valosin containing protein | ||
|gene_id=7415 | |gene_id=7415 | ||
| Line 21: | Line 21: | ||
|gene_source=HGNC:12666 | |gene_source=HGNC:12666 | ||
|gene_symbol=VCP | |gene_symbol=VCP | ||
| − | |gene_synonyms=IBMPFD p97 | + | |gene_synonyms=CDC48 IBMPFD TERA p97 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:12666 | |hgnc_mgi_id=HGNC:12666 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_007126 | |nearest_refseq=NM_007126 | ||
|nearest_unigene=Hs.529782 | |nearest_unigene=Hs.529782 | ||
| − | |num_trans= | + | |num_trans=42 |
|p97= | |p97= | ||
|species=human | |species=human | ||
| Line 34: | Line 34: | ||
|start_of_center_position=35072611 | |start_of_center_position=35072611 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000679902.1 ENST00000679800.1 ENST00000677257.1 ENST00000678465.1 ENST00000358901.11 ENST00000681335.1 ENST00000680916.1 ENST00000679599.1 ENST00000679862.1 ENST00000681690.1 ENST00000676836.2 ENST00000480327.2 ENST00000680079.1 ENST00000681386.1 ENST00000679392.1 ENST00000680575.1 ENST00000680108.1 NM_007126 BC096751 AK312310 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100561.1 | |tss_id=hg_100561.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=V9HW80 |
}} | }} | ||
Revision as of 15:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35072611 |
|---|---|
| End of the center position in the TSS region: | 35072612 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000679902.1 ENST00000679800.1 ENST00000677257.1 ENST00000678465.1 ENST00000358901.11 ENST00000681335.1 ENST00000680916.1 ENST00000679599.1 ENST00000679862.1 ENST00000681690.1 ENST00000676836.2 ENST00000480327.2 ENST00000680079.1 ENST00000681386.1 ENST00000679392.1 ENST00000680575.1 ENST00000680108.1 NM_007126 BC096751 AK312310 |
|---|---|
| Distance: | 0 |
| Num_trans: | 42 |
| All_trans: | ENST00000679902.1:0 ENST00000679800.1:0 ENST00000677257.1:0 ENST00000678465.1:0 ENST00000358901.11:0 ENST00000681335.1:0 ENST00000680916.1:0 ENST00000679599.1:0 ENST00000679862.1:0 ENST00000681690.1:0 ENST00000676836.2:0 ENST00000480327.2:0 ENST00000680079.1:0 ENST00000681386.1:0 ENST00000679392.1:0 ENST00000680575.1:0 ENST00000680108.1:0 NM_007126:0 BC096751:0 AK312310:0 BC012195:-5 BC017171:-5 BC021055:-5 ENST00000679647.1:-10 ENST00000678018.1:21 FJ224344:22 AF100752:22 FJ224352:22 ENST00000678650.1:28 ENST00000679901.1:28 ENST00000448530.6:-33 NM_001354927:-33 BC110913:37 ENST00000493886.5:40 BC122550:40 BC121794:40 LF211620:48 MA447197:48 ENST00000679204.2:147 AB385152:232 NM_001354928:281 ENST00000417448.2:384 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_007126 |
| Entrez ID: | 7415 |
| Nearest Unigene: | Hs.529782 |
| Nearest Refseq: | NM_007126 |
| Nearest Ensembl: | ENSG00000165280 |
| Gene Name: | valosin containing protein |
| Gene Alias: | CDC48 |
| Gene Description: | valosin containing protein |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
