Difference between revisions of "TSS:Hg 100569.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SLP-2= | |SLP-2= | ||
| − | |all_trans=ENST00000356493. | + | |all_trans=ENST00000356493.10:0 NM_013442:0 BC003025:0 AF190167:0 AK130546:0 BC014990:0 BC010152:0 BC002442:0 AK223102:0 AK027405:0 AF282596:0 AK225114:0 AK303883:0 AK307343:0 AK308552:0 DQ892677:14 KJ898778:15 DQ895920:15 CU677964:15 ENST00000452248.6:-38 ENST00000619795.4:-38 NM_001287031:-38 NM_001287033:-38 NM_001287032:-38 AF161458:38 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-2 |
|end=35103157 | |end=35103157 | ||
|end_of_center_position=35103133 | |end_of_center_position=35103133 | ||
|entrez_id=30968 | |entrez_id=30968 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=HSPC108 | + | |gene_alias=HSPC108|SLP-2 |
|gene_description=stomatin like 2 | |gene_description=stomatin like 2 | ||
|gene_id=30968 | |gene_id=30968 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:14559 | |hgnc_mgi_id=HGNC:14559 | ||
|nearest_ensembl=ENSG00000165283 | |nearest_ensembl=ENSG00000165283 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_013442 |
|nearest_refseq=NM_013442 | |nearest_refseq=NM_013442 | ||
|nearest_unigene=Hs.3439 | |nearest_unigene=Hs.3439 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=35103108 | |start=35103108 | ||
|start_of_center_position=35103132 | |start_of_center_position=35103132 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000356493. | + | |transcript_name=ENST00000356493.10 NM_013442 BC003025 AF190167 AK130546 BC014990 BC010152 BC002442 AK223102 AK027405 AF282596 AK225114 AK303883 AK307343 AK308552 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100569.1 | |tss_id=hg_100569.1 | ||
Revision as of 15:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35103132 |
|---|---|
| End of the center position in the TSS region: | 35103133 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000356493.10 NM_013442 BC003025 AF190167 AK130546 BC014990 BC010152 BC002442 AK223102 AK027405 AF282596 AK225114 AK303883 AK307343 AK308552 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000356493.10:0 NM_013442:0 BC003025:0 AF190167:0 AK130546:0 BC014990:0 BC010152:0 BC002442:0 AK223102:0 AK027405:0 AF282596:0 AK225114:0 AK303883:0 AK307343:0 AK308552:0 DQ892677:14 KJ898778:15 DQ895920:15 CU677964:15 ENST00000452248.6:-38 ENST00000619795.4:-38 NM_001287031:-38 NM_001287033:-38 NM_001287032:-38 AF161458:38 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_013442 |
| Entrez ID: | 30968 |
| Nearest Unigene: | Hs.3439 |
| Nearest Refseq: | NM_013442 |
| Nearest Ensembl: | ENSG00000165283 |
| Gene Name: | stomatin like 2 |
| Gene Alias: | HSPC108 |
| Gene Description: | stomatin like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
