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Difference between revisions of "TSS:Hg 100720.1"

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{{TSSDetail
 
{{TSSDetail
 
|BSAP=
 
|BSAP=
−
|all_trans=ENST00000358127.8:99 uc003zzo.3:99 M96944:178 NM_001280554:-179 NM_001280553:-179 NM_001280552:-179 NM_001280551:-179 NM_001280549:-179 NM_001280548:-179 NM_001280547:-179 NM_001280555:-179 NM_016734:-179 NM_001280556:-179 NM_001280550:-179 NR_103999:-179 NR_104000:-179 ENST00000377853.6:243 ENST00000377840.6:243 ENST00000377852.6:243 ENST00000523241.5:243 ENST00000520154.5:243 uc064tbd.1:243 uc010mlo.3:243 uc010mlp.3:243 uc010mls.3:243 uc010mlr.3:243 AY463952:243 AY463953:243 AY463954:243 AY463955:243 AY463956:243 AY463957:243 ENST00000520281.5:253 ENST00000446742.5:253 ENST00000522003.5:253 ENST00000523145.5:253 ENST00000523493.5:253 ENST00000414447.5:253 ENST00000377847.6:253 uc011lpw.3:253 uc011lpz.3:253 uc011lpx.3:253 uc011lqc.3:253 uc011lqa.3:253 uc011lpy.3:253 uc064tbe.1:253 FJ626419:253 FJ626420:253 FJ626421:253 FJ626422:253 FJ626423:253 FJ626424:253 FJ626425:253 BC156189:253 BC156927:253 AB529192:253
+
|all_trans=ENST00000358127.9:16 ENST00000377852.7:16 ENST00000523241.6:16 NM_001280548:16 NM_001280556:16 NM_001280547:16 NR_104000:16 NM_016734:16 NM_001280550:16 NM_001280554:16 NM_001280553:16 NM_001280552:16 NM_001280551:16 NM_001280549:16 NM_001280555:16 NR_103999:16 ENST00000520154.6:99 M96944:178 ENST00000377853.6:243 ENST00000377840.6:243 AY463952:243 AY463953:243 AY463954:243 AY463955:243 AY463956:243 AY463957:243 ENST00000520281.5:253 ENST00000446742.5:253 ENST00000522003.5:253 ENST00000523145.5:253 ENST00000523493.5:253 ENST00000414447.5:253 ENST00000377847.6:253 FJ626419:253 FJ626420:253 FJ626421:253 FJ626422:253 FJ626423:253 FJ626424:253 FJ626425:253 BC156189:253 BC156927:253 AB529192:253
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.08
 
|cpg_percent=0.08
−
|distance=99
+
|distance=16
−
|distance_to_tss=187
+
|distance_to_tss=-24
 
|end=37034300
 
|end=37034300
 
|end_of_center_position=37034292
 
|end_of_center_position=37034292
 
|entrez_id=5079
 
|entrez_id=5079
 
|gc_percent=0.562189
 
|gc_percent=0.562189
−
|gene_alias=ALL3
+
|gene_alias=ALL3|BSAP
 
|gene_description=paired box 5
 
|gene_description=paired box 5
 
|gene_id=5079
 
|gene_id=5079
Line 20: Line 20:
 
|hgnc_mgi_id=HGNC:8619
 
|hgnc_mgi_id=HGNC:8619
 
|nearest_ensembl=ENSG00000196092
 
|nearest_ensembl=ENSG00000196092
−
|nearest_promoter_id=NM_001280549
+
|nearest_promoter_id=NM_001280553
 
|nearest_refseq=NM_016734
 
|nearest_refseq=NM_016734
 
|nearest_unigene=Hs.654464
 
|nearest_unigene=Hs.654464
−
|num_trans=56
+
|num_trans=43
 
|species=human
 
|species=human
 
|start=37034283
 
|start=37034283
 
|start_of_center_position=37034291
 
|start_of_center_position=37034291
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000358127.8 uc003zzo.3
+
|transcript_name=ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 NM_001280548 NM_001280556 NM_001280547 NR_104000 NM_016734 NM_001280550 NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280555 NR_103999
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_100720.1
 
|tss_id=hg_100720.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=Q02548
+
|uniprot_id=E7EQT0 E7ES87 Q02548
 
}}
 
}}

Revision as of 15:26, 15 June 2021

Basic information about the TSS

TSS ID:hg_100720.1
Species:human
Chr:chr9
TSS Classification:yes
Start:37034283
End:37034300
Strand:-
TSS Score:1
Start of the center position in the TSS region:37034291
End of the center position in the TSS region:37034292



Gene and protein annotation

Transcript_name:ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 NM_001280548 NM_001280556 NM_001280547 NR_104000 NM_016734 NM_001280550 NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280555 NR_103999
Distance:16
GeneID:5079
HGNC/MGI_ID:HGNC:8619
UniProt_ID:E7EQT0 E7ES87 Q02548
Gene_name:paired box 5
Gene_symbol:PAX5
Gene_synonyms:BSAP
Gene_source:HGNC:8619



Transcript annotation

Transcript_name:ENST00000358127.9 ENST00000377852.7 ENST00000523241.6 NM_001280548 NM_001280556 NM_001280547 NR_104000 NM_016734 NM_001280550 NM_001280554 NM_001280553 NM_001280552 NM_001280551 NM_001280549 NM_001280555 NR_103999
Distance:16
Num_trans:43
All_trans:ENST00000358127.9:16 ENST00000377852.7:16 ENST00000523241.6:16 NM_001280548:16 NM_001280556:16 NM_001280547:16 NR_104000:16 NM_016734:16 NM_001280550:16 NM_001280554:16 NM_001280553:16 NM_001280552:16 NM_001280551:16 NM_001280549:16 NM_001280555:16 NR_103999:16 ENST00000520154.6:99 M96944:178 ENST00000377853.6:243 ENST00000377840.6:243 AY463952:243 AY463953:243 AY463954:243 AY463955:243 AY463956:243 AY463957:243 ENST00000520281.5:253 ENST00000446742.5:253 ENST00000522003.5:253 ENST00000523145.5:253 ENST00000523493.5:253 ENST00000414447.5:253 ENST00000377847.6:253 FJ626419:253 FJ626420:253 FJ626421:253 FJ626422:253 FJ626423:253 FJ626424:253 FJ626425:253 BC156189:253 BC156927:253 AB529192:253



TATA-Box annotation

Distance to TSS:-24
Nearest PromoterID:NM_001280553
Entrez ID:5079
Nearest Unigene:Hs.654464
Nearest Refseq:NM_016734
Nearest Ensembl:ENSG00000196092
Gene Name:paired box 5
Gene Alias:ALL3
Gene Description:paired box 5
Gene Type:protein-coding
CpG%:0.08
GC%:0.562189
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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