Difference between revisions of "TSS:Mm 32109.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000030289.8:67 NM_146144:67 NM_001301414 | + | |all_trans=ENSMUST00000030289.8:67 NM_001356424:67 NM_146144:67 NM_001301414:67 AK080882:67 ENSMUST00000091358.10:136 BC018179:187 ENSMUST00000169053.1:221 BC020007:234 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:2385198 | |hgnc_mgi_id=MGI:2385198 | ||
|nearest_ensembl=ENSMUSG00000028560 | |nearest_ensembl=ENSMUSG00000028560 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_146144 |
|nearest_refseq=NM_146144 | |nearest_refseq=NM_146144 | ||
|nearest_unigene=Mm.371692 | |nearest_unigene=Mm.371692 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=98923724 | |start=98923724 | ||
|start_of_center_position=98923733 | |start_of_center_position=98923733 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000030289.8 NM_146144 NM_001301414 | + | |transcript_name=ENSMUST00000030289.8 NM_001356424 NM_146144 NM_001301414 AK080882 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_32109.1 | |tss_id=mm_32109.1 | ||
Revision as of 02:13, 21 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 98923733 |
|---|---|
| End of the center position in the TSS region: | 98923734 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000030289.8 NM_001356424 NM_146144 NM_001301414 AK080882 |
|---|---|
| Distance: | 67 |
| Num_trans: | 9 |
| All_trans: | ENSMUST00000030289.8:67 NM_001356424:67 NM_146144:67 NM_001301414:67 AK080882:67 ENSMUST00000091358.10:136 BC018179:187 ENSMUST00000169053.1:221 BC020007:234 |
TATA-Box annotation
| Distance to TSS: | -76 |
|---|---|
| Nearest PromoterID: | NM_146144 |
| Entrez ID: | 230484 |
| Nearest Unigene: | Mm.371692 |
| Nearest Refseq: | NM_146144 |
| Nearest Ensembl: | ENSMUSG00000028560 |
| Gene Name: | ubiquitin specific peptidase 1 |
| Gene Alias: | - |
| Gene Description: | ubiquitin specific peptidase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
