Difference between revisions of "TSS:Hg 100827.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_001099666: | + | |all_trans=ENST00000340434.5:0 NM_001366938:0 NM_001366940:0 NM_001366939:0 NM_001099666:0 NM_001366936:0 NM_001366935:0 NM_001366937:0 NR_159517:0 NR_159516:0 NR_159515:0 LF211284:0 MA446861:0 ENST00000472967.2:35 ENST00000474925.2:39 BC053622:52 ENST00000377200.9:53 AL832683:53 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.2 | |cpg_percent=0.2 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=69760024 | |end=69760024 | ||
|end_of_center_position=69760009 | |end_of_center_position=69760009 | ||
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|hgnc_mgi_id=HGNC:30449 | |hgnc_mgi_id=HGNC:30449 | ||
|nearest_ensembl=ENSG00000188647 | |nearest_ensembl=ENSG00000188647 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001366940 |
|nearest_refseq=NM_001099666 | |nearest_refseq=NM_001099666 | ||
|nearest_unigene=Hs.744192 | |nearest_unigene=Hs.744192 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=69759993 | |start=69759993 | ||
|start_of_center_position=69760008 | |start_of_center_position=69760008 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_001099666 | + | |transcript_name=ENST00000340434.5 NM_001366938 NM_001366940 NM_001366939 NM_001099666 NM_001366936 NM_001366935 NM_001366937 NR_159517 NR_159516 NR_159515 LF211284 MA446861 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100827.1 | |tss_id=hg_100827.1 | ||
Revision as of 15:29, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 69760008 |
|---|---|
| End of the center position in the TSS region: | 69760009 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000340434.5 NM_001366938 NM_001366940 NM_001366939 NM_001099666 NM_001366936 NM_001366935 NM_001366937 NR_159517 NR_159516 NR_159515 LF211284 MA446861 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000340434.5:0 NM_001366938:0 NM_001366940:0 NM_001366939:0 NM_001099666:0 NM_001366936:0 NM_001366935:0 NM_001366937:0 NR_159517:0 NR_159516:0 NR_159515:0 LF211284:0 MA446861:0 ENST00000472967.2:35 ENST00000474925.2:39 BC053622:52 ENST00000377200.9:53 AL832683:53 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_001366940 |
| Entrez ID: | 375743 |
| Nearest Unigene: | Hs.744192 |
| Nearest Refseq: | NM_001099666 |
| Nearest Ensembl: | ENSG00000188647 |
| Gene Name: | protein prenyltransferase alpha subunit repeat containing 1 |
| Gene Alias: | - |
| Gene Description: | protein prenyltransferase alpha subunit repeat containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.2 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
