Difference between revisions of "TSS:Hg 100838.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NR_039990:416 BC040840:416 ENST00000594708.1 | + | |all_trans=NR_039990:416 BC040840:416 ENST00000594708.1:424 AK124136:424 CR936772:432 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=416 | |distance=416 | ||
| − | |distance_to_tss= | + | |distance_to_tss=318 |
|end=70259303 | |end=70259303 | ||
|end_of_center_position=70259297 | |end_of_center_position=70259297 | ||
| Line 12: | Line 12: | ||
|gene_description=structural maintenance of chromosomes 5 | |gene_description=structural maintenance of chromosomes 5 | ||
|gene_id=100507299 | |gene_id=100507299 | ||
| − | |gene_name=SMC5 | + | |gene_name=SMC5 divergent transcript |
|gene_source=HGNC:48718 | |gene_source=HGNC:48718 | ||
| − | |gene_symbol=SMC5- | + | |gene_symbol=SMC5-DT |
|gene_synonyms=MAMDC2-AS2 | |gene_synonyms=MAMDC2-AS2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_015110 | |nearest_refseq=NM_015110 | ||
|nearest_unigene=Hs.534189 | |nearest_unigene=Hs.534189 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=70259289 | |start=70259289 | ||
Revision as of 15:29, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 70259296 |
|---|---|
| End of the center position in the TSS region: | 70259297 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_039990 BC040840 |
|---|---|
| Distance: | 416 |
| Num_trans: | 5 |
| All_trans: | NR_039990:416 BC040840:416 ENST00000594708.1:424 AK124136:424 CR936772:432 |
TATA-Box annotation
| Distance to TSS: | 318 |
|---|---|
| Nearest PromoterID: | NM_015110 |
| Entrez ID: | 23137 |
| Nearest Unigene: | Hs.534189 |
| Nearest Refseq: | NM_015110 |
| Nearest Ensembl: | ENSG00000198887 |
| Gene Name: | SMC5 divergent transcript |
| Gene Alias: | SMC5L1 |
| Gene Description: | structural maintenance of chromosomes 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
