Difference between revisions of "TSS:Hg 100880.1"
From referenceTSS
| Line 2: | Line 2: | ||
|LTRPC3= | |LTRPC3= | ||
|MLSN2= | |MLSN2= | ||
| − | |all_trans=ENST00000437699.3 | + | |all_trans=ENST00000437699.3:8 KF987075:8 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=8 | |distance=8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3572 |
|end=70865484 | |end=70865484 | ||
|end_of_center_position=70865481 | |end_of_center_position=70865481 | ||
|entrez_id=80036 | |entrez_id=80036 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| − | |gene_alias=GON-2 | + | |gene_alias=GON-2|LTRPC3|MLSN2 |
|gene_description=transient receptor potential cation channel subfamily M member 3 | |gene_description=transient receptor potential cation channel subfamily M member 3 | ||
|gene_id=80036 | |gene_id=80036 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:17992 | |hgnc_mgi_id=HGNC:17992 | ||
|nearest_ensembl=ENSG00000083067 | |nearest_ensembl=ENSG00000083067 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_024971 |
|nearest_refseq=NM_020952 | |nearest_refseq=NM_020952 | ||
|nearest_unigene=Hs.47288 | |nearest_unigene=Hs.47288 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=70865476 | |start=70865476 | ||
|start_of_center_position=70865480 | |start_of_center_position=70865480 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-33(CTGTATATAAGA,-,0.00),59(CCATCTTAAAGG,-,0.00) |
| − | |transcript_name=ENST00000437699.3 | + | |transcript_name=ENST00000437699.3 KF987075 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100880.1 | |tss_id=hg_100880.1 | ||
Revision as of 15:30, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70865480 |
|---|---|
| End of the center position in the TSS region: | 70865481 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000437699.3 KF987075 |
|---|---|
| Distance: | 8 |
| Num_trans: | 2 |
| All_trans: | ENST00000437699.3:8 KF987075:8 |
TATA-Box annotation
| Distance to TSS: | 3572 |
|---|---|
| Nearest PromoterID: | NM_024971 |
| Entrez ID: | 80036 |
| Nearest Unigene: | Hs.47288 |
| Nearest Refseq: | NM_020952 |
| Nearest Ensembl: | ENSG00000083067 |
| Gene Name: | transient receptor potential cation channel subfamily M member 3 |
| Gene Alias: | GON-2 |
| Gene Description: | transient receptor potential cation channel subfamily M member 3 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CTGTATATAAGA,-,0.00),59(CCATCTTAAAGG,-,0.00) |
