Difference between revisions of "TSS:Hg 100987.1"
From referenceTSS
| Line 8: | Line 8: | ||
|PUMB1= | |PUMB1= | ||
|RALDH1= | |RALDH1= | ||
| − | |all_trans= | + | |all_trans=ENST00000376939.5:192 LP895625:192 ENST00000297785.8:195 NM_000689:195 FJ224286:195 AK302168:195 AK026641:204 AK000118:204 EU668318:204 AB209821:205 BC001505:223 AF003341:248 AY390731:248 EU794589:248 BT006921:248 DQ890669:248 DQ893850:248 AB587538:248 KJ890654:249 ENST00000493113.1:281 ENST00000482210.5:286 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=192 |
| − | |distance_to_tss= | + | |distance_to_tss=-211 |
|end=72953281 | |end=72953281 | ||
|end_of_center_position=72953265 | |end_of_center_position=72953265 | ||
|entrez_id=216 | |entrez_id=216 | ||
|gc_percent=0.39801 | |gc_percent=0.39801 | ||
| − | |gene_alias=ALDC | + | |gene_alias=ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 |
|gene_description=aldehyde dehydrogenase 1 family member A1 | |gene_description=aldehyde dehydrogenase 1 family member A1 | ||
|gene_id=216 | |gene_id=216 | ||
| Line 30: | Line 30: | ||
|nearest_refseq=NM_000689 | |nearest_refseq=NM_000689 | ||
|nearest_unigene=Hs.76392 | |nearest_unigene=Hs.76392 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=72953247 | |start=72953247 | ||
|start_of_center_position=72953264 | |start_of_center_position=72953264 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000376939.5 LP895625 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_100987.1 | |tss_id=hg_100987.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5SYQ9 |
}} | }} | ||
Revision as of 15:32, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72953264 |
|---|---|
| End of the center position in the TSS region: | 72953265 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000376939.5 LP895625 |
|---|---|
| Distance: | 192 |
| Num_trans: | 21 |
| All_trans: | ENST00000376939.5:192 LP895625:192 ENST00000297785.8:195 NM_000689:195 FJ224286:195 AK302168:195 AK026641:204 AK000118:204 EU668318:204 AB209821:205 BC001505:223 AF003341:248 AY390731:248 EU794589:248 BT006921:248 DQ890669:248 DQ893850:248 AB587538:248 KJ890654:249 ENST00000493113.1:281 ENST00000482210.5:286 |
TATA-Box annotation
| Distance to TSS: | -211 |
|---|---|
| Nearest PromoterID: | NM_000689 |
| Entrez ID: | 216 |
| Nearest Unigene: | Hs.76392 |
| Nearest Refseq: | NM_000689 |
| Nearest Ensembl: | ENSG00000165092 |
| Gene Name: | aldehyde dehydrogenase 1 family member A1 |
| Gene Alias: | ALDC |
| Gene Description: | aldehyde dehydrogenase 1 family member A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.39801 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
