Difference between revisions of "TSS:Hg 231508.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000340717.4:-4 | + | |all_trans=ENST00000340717.4:-4 LP896550:-4 AK056176:-4 ENST00000376447.4:18 NM_152573:18 BC023566:32 AK290986:290 KJ895699:293 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=-4 | |distance=-4 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-24 |
|end=83063173 | |end=83063173 | ||
|end_of_center_position=83063167 | |end_of_center_position=83063167 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_152573 | |nearest_refseq=NM_152573 | ||
|nearest_unigene=Hs.129136 | |nearest_unigene=Hs.129136 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=83063159 | |start=83063159 | ||
|start_of_center_position=83063166 | |start_of_center_position=83063166 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000340717.4 | + | |transcript_name=ENST00000340717.4 LP896550 AK056176 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_231508.1 | |tss_id=hg_231508.1 | ||
Revision as of 12:02, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 83063166 |
|---|---|
| End of the center position in the TSS region: | 83063167 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000340717.4 LP896550 AK056176 |
|---|---|
| Distance: | -4 |
| Num_trans: | 8 |
| All_trans: | ENST00000340717.4:-4 LP896550:-4 AK056176:-4 ENST00000376447.4:18 NM_152573:18 BC023566:32 AK290986:290 KJ895699:293 |
TATA-Box annotation
| Distance to TSS: | -24 |
|---|---|
| Nearest PromoterID: | NM_152573 |
| Entrez ID: | 158158 |
| Nearest Unigene: | Hs.129136 |
| Nearest Refseq: | NM_152573 |
| Nearest Ensembl: | ENSG00000165105 |
| Gene Name: | RAS and EF-hand domain containing |
| Gene Alias: | RAB45 |
| Gene Description: | RAS and EF-hand domain containing |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
