Difference between revisions of "TSS:Hg 101134.1"
From referenceTSS
| Line 3: | Line 3: | ||
|EPB41LO= | |EPB41LO= | ||
|P410= | |P410= | ||
| − | |all_trans=ENST00000328788.5 | + | |all_trans=NM_001244962:0 NM_001375487:0 ENST00000328788.5:-14 BC023560:-14 GQ129452:52 KJ906467:53 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=16 |
|end=83267273 | |end=83267273 | ||
|end_of_center_position=83267252 | |end_of_center_position=83267252 | ||
|entrez_id=257019 | |entrez_id=257019 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=4.1O | + | |gene_alias=4.1O{{!}}EPB41L4O{{!}}EPB41LO{{!}}P410 |
|gene_description=FERM domain containing 3 | |gene_description=FERM domain containing 3 | ||
|gene_id=257019 | |gene_id=257019 | ||
| Line 30: | Line 30: | ||
|start_of_center_position=83267251 | |start_of_center_position=83267251 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=29(GTCCTTTAAAAC,-,0.00),31(CCTTTAAAACAG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=NM_001244962 NM_001375487 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101134.1 | |tss_id=hg_101134.1 | ||
Revision as of 16:33, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 83267251 |
|---|---|
| End of the center position in the TSS region: | 83267252 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001244962 NM_001375487 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | NM_001244962:0 NM_001375487:0 ENST00000328788.5:-14 BC023560:-14 GQ129452:52 KJ906467:53 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001244962 |
| Entrez ID: | 257019 |
| Nearest Unigene: | Hs.127535 |
| Nearest Refseq: | NM_174938 |
| Nearest Ensembl: | ENSG00000172159 |
| Gene Name: | FERM domain containing 3 |
| Gene Alias: | 4.1O|EPB41L4O|EPB41LO|P410 |
| Gene Description: | FERM domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 29(GTCCTTTAAAAC,-,0.00),31(CCTTTAAAACAG,+,0.00) |
