Difference between revisions of "TSS:Hg 101174.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C9orf76= | |C9orf76= | ||
|FAAP75= | |FAAP75= | ||
| − | |all_trans=ENST00000376281.8:0 ENST00000472778.5:0 ENST00000483135 | + | |all_trans=ENST00000376281.8:0 ENST00000472778.5:0 ENST00000483135.1:0 X72727:0 AK291336:0 BC014980:1 NM_031262:-147 NM_002140:-147 NM_001318188:318 NM_001318187:318 NM_001318186:318 ENST00000360384.9:339 AK294067:345 AK307962:373 ENST00000376263.8:374 NM_031263:374 AK300744:375 AK096385:381 AB209562:387 ENST00000457156.5:399 BC025321:399 BC000355:422 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=170 |
|end=83980635 | |end=83980635 | ||
|end_of_center_position=83980612 | |end_of_center_position=83980612 | ||
| − | |entrez_id= | + | |entrez_id=3190 |
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias= | + | |gene_alias=AUKS{{!}}CSBP{{!}}HNRPK{{!}}TUNP |
| − | |gene_description= | + | |gene_description=heterogeneous nuclear ribonucleoprotein K |
|gene_id=3190 | |gene_id=3190 | ||
|gene_name=heterogeneous nuclear ribonucleoprotein K | |gene_name=heterogeneous nuclear ribonucleoprotein K | ||
| Line 20: | Line 20: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:5044 | |hgnc_mgi_id=HGNC:5044 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000165119 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_031262 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_002140 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.522257 |
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=83980588 | |start=83980588 | ||
|start_of_center_position=83980611 | |start_of_center_position=83980611 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000376281.8 ENST00000472778.5 ENST00000483135 | + | |transcript_name=ENST00000376281.8 ENST00000472778.5 ENST00000483135.1 X72727 AK291336 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101174.1 | |tss_id=hg_101174.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P61978 S4R457 |
}} | }} | ||
Revision as of 16:33, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 83980611 |
|---|---|
| End of the center position in the TSS region: | 83980612 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376281.8 ENST00000472778.5 ENST00000483135.1 X72727 AK291336 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000376281.8:0 ENST00000472778.5:0 ENST00000483135.1:0 X72727:0 AK291336:0 BC014980:1 NM_031262:-147 NM_002140:-147 NM_001318188:318 NM_001318187:318 NM_001318186:318 ENST00000360384.9:339 AK294067:345 AK307962:373 ENST00000376263.8:374 NM_031263:374 AK300744:375 AK096385:381 AB209562:387 ENST00000457156.5:399 BC025321:399 BC000355:422 |
TATA-Box annotation
| Distance to TSS: | 170 |
|---|---|
| Nearest PromoterID: | NM_031262 |
| Entrez ID: | 3190 |
| Nearest Unigene: | Hs.522257 |
| Nearest Refseq: | NM_002140 |
| Nearest Ensembl: | ENSG00000165119 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein K |
| Gene Alias: | AUKS|CSBP|HNRPK|TUNP |
| Gene Description: | heterogeneous nuclear ribonucleoprotein K |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
