Difference between revisions of "TSS:Hg 101255.1"
From referenceTSS
| Line 3: | Line 3: | ||
|P42= | |P42= | ||
|PNQALRE= | |PNQALRE= | ||
| − | |all_trans=AY904367:-225 KU178572:-225 KU178573:-225 KU178574:-225 KU178575:-225 KU178576:-225 KU178577:-225 ENST00000375871.8 | + | |all_trans=AY904367:-225 KU178572:-225 KU178573:-225 KU178574:-225 KU178575:-225 KU178576:-225 KU178577:-225 ENST00000375871.8:-266 ENST00000605159.5:-284 BC002655:-284 AK298993:-302 ENST00000604175.5:-310 ENST00000605591.1:-310 AK296328:-310 ENST00000325303.9:-312 NM_001170639:-312 NM_001039803:-312 AK075325:-312 AK294193:-312 ENST00000603475.1:-313 AK226135:-313 ENST00000336654.9:-368 AF035013:-458 ENST00000459720.5:-464 AF113130:-464 ENST00000486228.7:-480 AK291713:-480 BX647489:-488 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=-225 | |distance=-225 | ||
| − | |distance_to_tss= | + | |distance_to_tss=318 |
|end=87974221 | |end=87974221 | ||
|end_of_center_position=87974215 | |end_of_center_position=87974215 | ||
|entrez_id=23552 | |entrez_id=23552 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=CCRK | + | |gene_alias=CCRK{{!}}CDCH{{!}}P42{{!}}PNQALRE |
|gene_description=cyclin dependent kinase 20 | |gene_description=cyclin dependent kinase 20 | ||
|gene_id=23552 | |gene_id=23552 | ||
| − | |gene_name=cyclin | + | |gene_name=cyclin dependent kinase 20 |
|gene_source=HGNC:21420 | |gene_source=HGNC:21420 | ||
|gene_symbol=CDK20 | |gene_symbol=CDK20 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:21420 | |hgnc_mgi_id=HGNC:21420 | ||
|nearest_ensembl=ENSG00000156345 | |nearest_ensembl=ENSG00000156345 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001170639 |
|nearest_refseq=NM_012119 | |nearest_refseq=NM_012119 | ||
|nearest_unigene=Hs.522274 | |nearest_unigene=Hs.522274 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=87974208 | |start=87974208 | ||
|start_of_center_position=87974214 | |start_of_center_position=87974214 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-56(GTTTTTAAAACC,+,0.00) |
|transcript_name=AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 | |transcript_name=AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:35, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87974214 |
|---|---|
| End of the center position in the TSS region: | 87974215 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 |
|---|---|
| Distance: | -225 |
| Num_trans: | 28 |
| All_trans: | AY904367:-225 KU178572:-225 KU178573:-225 KU178574:-225 KU178575:-225 KU178576:-225 KU178577:-225 ENST00000375871.8:-266 ENST00000605159.5:-284 BC002655:-284 AK298993:-302 ENST00000604175.5:-310 ENST00000605591.1:-310 AK296328:-310 ENST00000325303.9:-312 NM_001170639:-312 NM_001039803:-312 AK075325:-312 AK294193:-312 ENST00000603475.1:-313 AK226135:-313 ENST00000336654.9:-368 AF035013:-458 ENST00000459720.5:-464 AF113130:-464 ENST00000486228.7:-480 AK291713:-480 BX647489:-488 |
TATA-Box annotation
| Distance to TSS: | 318 |
|---|---|
| Nearest PromoterID: | NM_001170639 |
| Entrez ID: | 23552 |
| Nearest Unigene: | Hs.522274 |
| Nearest Refseq: | NM_012119 |
| Nearest Ensembl: | ENSG00000156345 |
| Gene Name: | cyclin dependent kinase 20 |
| Gene Alias: | CCRK|CDCH|P42|PNQALRE |
| Gene Description: | cyclin dependent kinase 20 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -56(GTTTTTAAAACC,+,0.00) |
