Difference between revisions of "TSS:Hg 101256.1"
From referenceTSS
| Line 3: | Line 3: | ||
|P42= | |P42= | ||
|PNQALRE= | |PNQALRE= | ||
| − | |all_trans=AY904367:-186 KU178572:-186 KU178573:-186 KU178574:-186 KU178575:-186 KU178576:-186 KU178577:-186 ENST00000375871.8 | + | |all_trans=AY904367:-186 KU178572:-186 KU178573:-186 KU178574:-186 KU178575:-186 KU178576:-186 KU178577:-186 ENST00000375871.8:-227 ENST00000605159.5:-245 BC002655:-245 AK298993:-263 ENST00000604175.5:-271 ENST00000605591.1:-271 AK296328:-271 ENST00000325303.9:-273 NM_001170639:-273 NM_001039803:-273 AK075325:-273 AK294193:-273 ENST00000603475.1:-274 AK226135:-274 ENST00000336654.9:-329 AF035013:-419 ENST00000459720.5:-425 AF113130:-425 ENST00000486228.7:-441 AK291713:-441 BX647489:-449 ENST00000375883.7:-493 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=-186 | |distance=-186 | ||
| − | |distance_to_tss= | + | |distance_to_tss=291 |
|end=87974260 | |end=87974260 | ||
|end_of_center_position=87974242 | |end_of_center_position=87974242 | ||
|entrez_id=23552 | |entrez_id=23552 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=CCRK | + | |gene_alias=CCRK{{!}}CDCH{{!}}P42{{!}}PNQALRE |
|gene_description=cyclin dependent kinase 20 | |gene_description=cyclin dependent kinase 20 | ||
|gene_id=23552 | |gene_id=23552 | ||
| − | |gene_name=cyclin | + | |gene_name=cyclin dependent kinase 20 |
|gene_source=HGNC:21420 | |gene_source=HGNC:21420 | ||
|gene_symbol=CDK20 | |gene_symbol=CDK20 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:21420 | |hgnc_mgi_id=HGNC:21420 | ||
|nearest_ensembl=ENSG00000156345 | |nearest_ensembl=ENSG00000156345 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001170639 |
|nearest_refseq=NM_012119 | |nearest_refseq=NM_012119 | ||
|nearest_unigene=Hs.522274 | |nearest_unigene=Hs.522274 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=87974223 | |start=87974223 | ||
|start_of_center_position=87974241 | |start_of_center_position=87974241 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-29(GTTTTTAAAACC,+,0.00) |
|transcript_name=AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 | |transcript_name=AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 16:35, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87974241 |
|---|---|
| End of the center position in the TSS region: | 87974242 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 |
|---|---|
| Distance: | -186 |
| Num_trans: | 29 |
| All_trans: | AY904367:-186 KU178572:-186 KU178573:-186 KU178574:-186 KU178575:-186 KU178576:-186 KU178577:-186 ENST00000375871.8:-227 ENST00000605159.5:-245 BC002655:-245 AK298993:-263 ENST00000604175.5:-271 ENST00000605591.1:-271 AK296328:-271 ENST00000325303.9:-273 NM_001170639:-273 NM_001039803:-273 AK075325:-273 AK294193:-273 ENST00000603475.1:-274 AK226135:-274 ENST00000336654.9:-329 AF035013:-419 ENST00000459720.5:-425 AF113130:-425 ENST00000486228.7:-441 AK291713:-441 BX647489:-449 ENST00000375883.7:-493 |
TATA-Box annotation
| Distance to TSS: | 291 |
|---|---|
| Nearest PromoterID: | NM_001170639 |
| Entrez ID: | 23552 |
| Nearest Unigene: | Hs.522274 |
| Nearest Refseq: | NM_012119 |
| Nearest Ensembl: | ENSG00000156345 |
| Gene Name: | cyclin dependent kinase 20 |
| Gene Alias: | CCRK|CDCH|P42|PNQALRE |
| Gene Description: | cyclin dependent kinase 20 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -29(GTTTTTAAAACC,+,0.00) |
