Difference between revisions of "TSS:Hg 101257.1"
From referenceTSS
| Line 3: | Line 3: | ||
|P42= | |P42= | ||
|PNQALRE= | |PNQALRE= | ||
| − | |all_trans=ENST00000603475.1:0 ENST00000604175.5:0 ENST00000605591.1:0 | + | |all_trans=ENST00000325303.9:0 ENST00000603475.1:0 ENST00000604175.5:0 ENST00000605591.1:0 NM_001170639:0 NM_001039803:0 AK075325:0 AK226135:0 AK294193:0 AK298993:0 AK296328:0 ENST00000605159.5:10 BC002655:10 ENST00000336654.9:-16 ENST00000375871.8:28 AY904367:69 KU178572:69 KU178573:69 KU178574:69 KU178575:69 KU178576:69 KU178577:69 AF035013:-106 ENST00000459720.5:-112 AF113130:-112 ENST00000486228.7:-128 AK291713:-128 BX647489:-136 ENST00000375883.7:-180 NM_178432:-207 NM_001170640:-207 NM_012119:-207 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-11 |
|end=87974573 | |end=87974573 | ||
|end_of_center_position=87974544 | |end_of_center_position=87974544 | ||
|entrez_id=23552 | |entrez_id=23552 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=CCRK | + | |gene_alias=CCRK{{!}}CDCH{{!}}P42{{!}}PNQALRE |
|gene_description=cyclin dependent kinase 20 | |gene_description=cyclin dependent kinase 20 | ||
|gene_id=23552 | |gene_id=23552 | ||
| − | |gene_name=cyclin | + | |gene_name=cyclin dependent kinase 20 |
|gene_source=HGNC:21420 | |gene_source=HGNC:21420 | ||
|gene_symbol=CDK20 | |gene_symbol=CDK20 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:21420 | |hgnc_mgi_id=HGNC:21420 | ||
|nearest_ensembl=ENSG00000156345 | |nearest_ensembl=ENSG00000156345 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001170639 |
|nearest_refseq=NM_012119 | |nearest_refseq=NM_012119 | ||
|nearest_unigene=Hs.522274 | |nearest_unigene=Hs.522274 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
|start=87974514 | |start=87974514 | ||
|start_of_center_position=87974543 | |start_of_center_position=87974543 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000603475.1 ENST00000604175.5 ENST00000605591.1 | + | |transcript_name=ENST00000325303.9 ENST00000603475.1 ENST00000604175.5 ENST00000605591.1 NM_001170639 NM_001039803 AK075325 AK226135 AK294193 AK298993 AK296328 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101257.1 | |tss_id=hg_101257.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DFP8 B4DK07 | + | |uniprot_id=B4DFP8 B4DK07 Q8IZL9 |
}} | }} | ||
Revision as of 16:35, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87974543 |
|---|---|
| End of the center position in the TSS region: | 87974544 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000325303.9 ENST00000603475.1 ENST00000604175.5 ENST00000605591.1 NM_001170639 NM_001039803 AK075325 AK226135 AK294193 AK298993 AK296328 |
|---|---|
| Distance: | 0 |
| Num_trans: | 32 |
| All_trans: | ENST00000325303.9:0 ENST00000603475.1:0 ENST00000604175.5:0 ENST00000605591.1:0 NM_001170639:0 NM_001039803:0 AK075325:0 AK226135:0 AK294193:0 AK298993:0 AK296328:0 ENST00000605159.5:10 BC002655:10 ENST00000336654.9:-16 ENST00000375871.8:28 AY904367:69 KU178572:69 KU178573:69 KU178574:69 KU178575:69 KU178576:69 KU178577:69 AF035013:-106 ENST00000459720.5:-112 AF113130:-112 ENST00000486228.7:-128 AK291713:-128 BX647489:-136 ENST00000375883.7:-180 NM_178432:-207 NM_001170640:-207 NM_012119:-207 |
TATA-Box annotation
| Distance to TSS: | -11 |
|---|---|
| Nearest PromoterID: | NM_001170639 |
| Entrez ID: | 23552 |
| Nearest Unigene: | Hs.522274 |
| Nearest Refseq: | NM_012119 |
| Nearest Ensembl: | ENSG00000156345 |
| Gene Name: | cyclin dependent kinase 20 |
| Gene Alias: | CCRK|CDCH|P42|PNQALRE |
| Gene Description: | cyclin dependent kinase 20 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
