Difference between revisions of "TSS:Hg 101397.1"
From referenceTSS
| Line 2: | Line 2: | ||
|BDB1= | |BDB1= | ||
|NTRKR2= | |NTRKR2= | ||
| − | |all_trans=ENST00000375708. | + | |all_trans=M97639:-15 ENST00000375708.4:-81 NM_004560:-81 NM_001318204:-81 BC126454:84 BC130522:84 BC051273:160 ENST00000476440.1:228 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=-15 | |distance=-15 | ||
| − | |distance_to_tss= | + | |distance_to_tss=88 |
|end=91950147 | |end=91950147 | ||
|end_of_center_position=91950141 | |end_of_center_position=91950141 | ||
|entrez_id=4920 | |entrez_id=4920 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=BDB | + | |gene_alias=BDB{{!}}BDB1{{!}}NTRKR2 |
|gene_description=receptor tyrosine kinase like orphan receptor 2 | |gene_description=receptor tyrosine kinase like orphan receptor 2 | ||
|gene_id=4920 | |gene_id=4920 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:10257 | |hgnc_mgi_id=HGNC:10257 | ||
|nearest_ensembl=ENSG00000169071 | |nearest_ensembl=ENSG00000169071 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001318204 |
|nearest_refseq=NM_004560 | |nearest_refseq=NM_004560 | ||
|nearest_unigene=Hs.98255 | |nearest_unigene=Hs.98255 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=91950133 | |start=91950133 | ||
|start_of_center_position=91950140 | |start_of_center_position=91950140 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=M97639 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101397.1 | |tss_id=hg_101397.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:39, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 91950140 |
|---|---|
| End of the center position in the TSS region: | 91950141 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | M97639 |
|---|---|
| Distance: | -15 |
| Num_trans: | 8 |
| All_trans: | M97639:-15 ENST00000375708.4:-81 NM_004560:-81 NM_001318204:-81 BC126454:84 BC130522:84 BC051273:160 ENST00000476440.1:228 |
TATA-Box annotation
| Distance to TSS: | 88 |
|---|---|
| Nearest PromoterID: | NM_001318204 |
| Entrez ID: | 4920 |
| Nearest Unigene: | Hs.98255 |
| Nearest Refseq: | NM_004560 |
| Nearest Ensembl: | ENSG00000169071 |
| Gene Name: | receptor tyrosine kinase like orphan receptor 2 |
| Gene Alias: | BDB|BDB1|NTRKR2 |
| Gene Description: | receptor tyrosine kinase like orphan receptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
