Difference between revisions of "TSS:Hg 101427.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SLRR2C= | |SLRR2C= | ||
| − | |all_trans=AB000114:24 AK313055:-26 AK225922:-33 AY358872:-86 BC046356:-89 ENST00000375550 | + | |all_trans=AB000114:24 AK313055:-26 AK225922:-33 AY358872:-86 BC046356:-89 ENST00000375550.5:-105 NM_005014:-188 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 10: | Line 10: | ||
|entrez_id=4958 | |entrez_id=4958 | ||
|gc_percent=0.308458 | |gc_percent=0.308458 | ||
| − | |gene_alias=OSAD | + | |gene_alias=OSAD{{!}}SLRR2C |
|gene_description=osteomodulin | |gene_description=osteomodulin | ||
|gene_id=4958 | |gene_id=4958 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_005014 | |nearest_refseq=NM_005014 | ||
|nearest_unigene=Hs.94070 | |nearest_unigene=Hs.94070 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=92424301 | |start=92424301 | ||
|start_of_center_position=92424333 | |start_of_center_position=92424333 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=77(TCATTTAAAGGA,+,0.00) |
|transcript_name=AB000114 | |transcript_name=AB000114 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 16:40, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 92424333 |
|---|---|
| End of the center position in the TSS region: | 92424334 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB000114 |
|---|---|
| Distance: | 24 |
| Num_trans: | 7 |
| All_trans: | AB000114:24 AK313055:-26 AK225922:-33 AY358872:-86 BC046356:-89 ENST00000375550.5:-105 NM_005014:-188 |
TATA-Box annotation
| Distance to TSS: | 220 |
|---|---|
| Nearest PromoterID: | NM_005014 |
| Entrez ID: | 4958 |
| Nearest Unigene: | Hs.94070 |
| Nearest Refseq: | NM_005014 |
| Nearest Ensembl: | ENSG00000127083 |
| Gene Name: | osteomodulin |
| Gene Alias: | OSAD|SLRR2C |
| Gene Description: | osteomodulin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 77(TCATTTAAAGGA,+,0.00) |
