Difference between revisions of "TSS:Hg 101434.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PLAP1= | |PLAP1= | ||
|SLRR1C= | |SLRR1C= | ||
| − | |all_trans=AY358329:0 AY029191:0 AK308107:0 ENST00000375544.7:-11 | + | |all_trans=ENST00000651738.1:0 AY358329:0 AY029191:0 AK308107:0 ENST00000375544.7:-11 NM_001193335:-11 NM_017680:-11 BC063114:-11 BC022059:-11 LF209785:-59 MA445362:-59 ENST00000650794.1:83 AK172737:83 AK304501:90 ENST00000375543.2:109 AK027359:109 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=28 |
|end=92482495 | |end=92482495 | ||
|end_of_center_position=92482479 | |end_of_center_position=92482479 | ||
|entrez_id=54829 | |entrez_id=54829 | ||
|gc_percent=0.402985 | |gc_percent=0.402985 | ||
| − | |gene_alias=OS3 | + | |gene_alias=OS3{{!}}PLAP-1{{!}}PLAP1{{!}}SLRR1C |
|gene_description=asporin | |gene_description=asporin | ||
|gene_id=54829 | |gene_id=54829 | ||
| Line 18: | Line 18: | ||
|gene_source=HGNC:14872 | |gene_source=HGNC:14872 | ||
|gene_symbol=ASPN | |gene_symbol=ASPN | ||
| − | |gene_synonyms=FLJ20129 | + | |gene_synonyms=FLJ20129 PLAP-1 SLRR1C |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:14872 | |hgnc_mgi_id=HGNC:14872 | ||
|nearest_ensembl=ENSG00000106819 | |nearest_ensembl=ENSG00000106819 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_017680 |
|nearest_refseq=NM_017680 | |nearest_refseq=NM_017680 | ||
|nearest_unigene=Hs.435655 | |nearest_unigene=Hs.435655 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=92482461 | |start=92482461 | ||
|start_of_center_position=92482478 | |start_of_center_position=92482478 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=AY358329 AY029191 AK308107 | + | |transcript_name=ENST00000651738.1 AY358329 AY029191 AK308107 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101434.1 | |tss_id=hg_101434.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A494C084 |
}} | }} | ||
Revision as of 16:40, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 92482478 |
|---|---|
| End of the center position in the TSS region: | 92482479 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000651738.1 AY358329 AY029191 AK308107 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000651738.1:0 AY358329:0 AY029191:0 AK308107:0 ENST00000375544.7:-11 NM_001193335:-11 NM_017680:-11 BC063114:-11 BC022059:-11 LF209785:-59 MA445362:-59 ENST00000650794.1:83 AK172737:83 AK304501:90 ENST00000375543.2:109 AK027359:109 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_017680 |
| Entrez ID: | 54829 |
| Nearest Unigene: | Hs.435655 |
| Nearest Refseq: | NM_017680 |
| Nearest Ensembl: | ENSG00000106819 |
| Gene Name: | asporin |
| Gene Alias: | OS3|PLAP-1|PLAP1|SLRR1C |
| Gene Description: | asporin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.402985 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
