Difference between revisions of "TSS:Hg 101439.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK296458:19 AK312820:24 AK303922:26 ENST00000344604.9:-29 ENST00000375540.5 | + | |all_trans=AK296458:19 AK312820:24 AK303922:26 ENST00000344604.9:-29 ENST00000375540.5:-29 BX537976:-29 AB011792:44 ENST00000444490.6:-66 NM_001197296:-66 NM_001197295:-66 NM_001393:-66 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:3154 | |hgnc_mgi_id=HGNC:3154 | ||
|nearest_ensembl=ENSG00000106823 | |nearest_ensembl=ENSG00000106823 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001393 |
|nearest_refseq=NM_001393 | |nearest_refseq=NM_001393 | ||
|nearest_unigene=Hs.117060 | |nearest_unigene=Hs.117060 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=92536013 | |start=92536013 | ||
|start_of_center_position=92536019 | |start_of_center_position=92536019 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=1(GTTTTTAAAGAA,+,0.00) |
|transcript_name=AK296458 | |transcript_name=AK296458 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:40, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 92536019 |
|---|---|
| End of the center position in the TSS region: | 92536020 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK296458 |
|---|---|
| Distance: | 19 |
| Num_trans: | 11 |
| All_trans: | AK296458:19 AK312820:24 AK303922:26 ENST00000344604.9:-29 ENST00000375540.5:-29 BX537976:-29 AB011792:44 ENST00000444490.6:-66 NM_001197296:-66 NM_001197295:-66 NM_001393:-66 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001393 |
| Entrez ID: | 1842 |
| Nearest Unigene: | Hs.117060 |
| Nearest Refseq: | NM_001393 |
| Nearest Ensembl: | ENSG00000106823 |
| Gene Name: | extracellular matrix protein 2 |
| Gene Alias: | - |
| Gene Description: | extracellular matrix protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 1(GTTTTTAAAGAA,+,0.00) |
