Difference between revisions of "TSS:Hg 243384.1"
From referenceTSS
| Line 2: | Line 2: | ||
|TRX= | |TRX= | ||
|TRX1= | |TRX1= | ||
| − | |all_trans= | + | |all_trans=CU690563:-130 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| − | |distance=- | + | |distance=-130 |
| − | |distance_to_tss= | + | |distance_to_tss=-97 |
|end=110256605 | |end=110256605 | ||
|end_of_center_position=93125044 | |end_of_center_position=93125044 | ||
|entrez_id=7295 | |entrez_id=7295 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=TRDX | + | |gene_alias=TRDX{{!}}TRX{{!}}TRX1 |
|gene_description=thioredoxin | |gene_description=thioredoxin | ||
|gene_id=7295 | |gene_id=7295 | ||
| − | |gene_name= | + | |gene_name=TXN |
|gene_source=HGNC:12435 | |gene_source=HGNC:12435 | ||
|gene_symbol=TXN | |gene_symbol=TXN | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:12435 | |hgnc_mgi_id=HGNC:12435 | ||
|nearest_ensembl=ENSG00000136810 | |nearest_ensembl=ENSG00000136810 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001244938 |
|nearest_refseq=NM_003329 | |nearest_refseq=NM_003329 | ||
|nearest_unigene=Hs.435136 | |nearest_unigene=Hs.435136 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=110256603 | |start=110256603 | ||
|start_of_center_position=93125043 | |start_of_center_position=93125043 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=62(CAGTTTATAAAG,-,0.00),64(GTTTATAAAGGG,+,0.00),64(GTTTATAAAGGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=CU690563 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243384.1 | |tss_id=hg_243384.1 | ||
Revision as of 16:37, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 93125043 |
|---|---|
| End of the center position in the TSS region: | 93125044 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU690563 |
|---|---|
| Distance: | -130 |
| Num_trans: | 1 |
| All_trans: | CU690563:-130 |
TATA-Box annotation
| Distance to TSS: | -97 |
|---|---|
| Nearest PromoterID: | NM_001244938 |
| Entrez ID: | 7295 |
| Nearest Unigene: | Hs.435136 |
| Nearest Refseq: | NM_003329 |
| Nearest Ensembl: | ENSG00000136810 |
| Gene Name: | TXN |
| Gene Alias: | TRDX|TRX|TRX1 |
| Gene Description: | thioredoxin |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 62(CAGTTTATAAAG,-,0.00),64(GTTTATAAAGGG,+,0.00),64(GTTTATAAAGGG,-,0.00) |
