Difference between revisions of "TSS:Hg 101629.1"
From referenceTSS
| Line 2: | Line 2: | ||
|NCBP= | |NCBP= | ||
|Sto1= | |Sto1= | ||
| − | |all_trans=ENST00000341170. | + | |all_trans=ENST00000341170.5:107 NM_139246:107 AK128615:130 BX538308:155 BX648493:157 BC035604:158 ENST00000375172.6:174 AK094043:174 AK291199:174 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=107 |
|distance_to_tss=65 | |distance_to_tss=65 | ||
|end=97633502 | |end=97633502 | ||
| Line 11: | Line 11: | ||
|entrez_id=4686 | |entrez_id=4686 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=CBP80 | + | |gene_alias=CBP80{{!}}NCBP{{!}}Sto1 |
|gene_description=nuclear cap binding protein subunit 1 | |gene_description=nuclear cap binding protein subunit 1 | ||
|gene_id=158427 | |gene_id=158427 | ||
| − | |gene_name=thiosulfate sulfurtransferase | + | |gene_name=thiosulfate sulfurtransferase like domain containing 2 |
|gene_source=HGNC:30087 | |gene_source=HGNC:30087 | ||
|gene_symbol=TSTD2 | |gene_symbol=TSTD2 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:30087 | |hgnc_mgi_id=HGNC:30087 | ||
|nearest_ensembl=ENSG00000136937 | |nearest_ensembl=ENSG00000136937 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351504 |
|nearest_refseq=NM_002486 | |nearest_refseq=NM_002486 | ||
|nearest_unigene=Hs.595669 | |nearest_unigene=Hs.595669 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=97633474 | |start=97633474 | ||
|start_of_center_position=97633488 | |start_of_center_position=97633488 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000341170. | + | |transcript_name=ENST00000341170.5 NM_139246 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101629.1 | |tss_id=hg_101629.1 | ||
Revision as of 16:44, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97633488 |
|---|---|
| End of the center position in the TSS region: | 97633489 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000341170.5 NM_139246 |
|---|---|
| Distance: | 107 |
| Num_trans: | 9 |
| All_trans: | ENST00000341170.5:107 NM_139246:107 AK128615:130 BX538308:155 BX648493:157 BC035604:158 ENST00000375172.6:174 AK094043:174 AK291199:174 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001351504 |
| Entrez ID: | 4686 |
| Nearest Unigene: | Hs.595669 |
| Nearest Refseq: | NM_002486 |
| Nearest Ensembl: | ENSG00000136937 |
| Gene Name: | thiosulfate sulfurtransferase like domain containing 2 |
| Gene Alias: | CBP80|NCBP|Sto1 |
| Gene Description: | nuclear cap binding protein subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
