Difference between revisions of "TSS:Hg 101642.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HSPC219= | |HSPC219= | ||
|NAP1= | |NAP1= | ||
| − | |all_trans= | + | |all_trans=ENST00000660312.1:0 NM_001371659:0 ENST00000471580.1:-277 ENST00000478126.5:-281 ENST00000455506.1:-296 ENST00000375117.8:-299 KJ898914:-302 CU678254:-302 DQ892983:-304 DQ896231:-304 ENST00000375119.8:-309 NM_001371657:-309 NM_001371658:-309 NM_016481:-309 NM_001330725:-309 NM_001371661:-309 NM_001371660:-309 ENST00000611338.4:-325 AY189280:-325 AF151053:-327 AK309270:-338 LF206453:-347 MA442030:-347 BC002863:-359 AK000213:-379 AK302701:-379 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=390 | |distance_to_tss=390 | ||
|end=97922191 | |end=97922191 | ||
| Line 11: | Line 11: | ||
|entrez_id=51531 | |entrez_id=51531 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=C9orf156 | + | |gene_alias=C9orf156{{!}}HSPC219{{!}}NAP1 |
|gene_description=tRNA methyltransferase O | |gene_description=tRNA methyltransferase O | ||
|gene_id=51531 | |gene_id=51531 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:30967 | |hgnc_mgi_id=HGNC:30967 | ||
|nearest_ensembl=ENSG00000136932 | |nearest_ensembl=ENSG00000136932 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016481 |
|nearest_refseq=NM_016481 | |nearest_refseq=NM_016481 | ||
|nearest_unigene=Hs.9196 | |nearest_unigene=Hs.9196 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=97922168 | |start=97922168 | ||
|start_of_center_position=97922179 | |start_of_center_position=97922179 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000660312.1 NM_001371659 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101642.1 | |tss_id=hg_101642.1 | ||
Revision as of 16:45, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97922179 |
|---|---|
| End of the center position in the TSS region: | 97922180 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000660312.1 NM_001371659 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | ENST00000660312.1:0 NM_001371659:0 ENST00000471580.1:-277 ENST00000478126.5:-281 ENST00000455506.1:-296 ENST00000375117.8:-299 KJ898914:-302 CU678254:-302 DQ892983:-304 DQ896231:-304 ENST00000375119.8:-309 NM_001371657:-309 NM_001371658:-309 NM_016481:-309 NM_001330725:-309 NM_001371661:-309 NM_001371660:-309 ENST00000611338.4:-325 AY189280:-325 AF151053:-327 AK309270:-338 LF206453:-347 MA442030:-347 BC002863:-359 AK000213:-379 AK302701:-379 |
TATA-Box annotation
| Distance to TSS: | 390 |
|---|---|
| Nearest PromoterID: | NM_016481 |
| Entrez ID: | 51531 |
| Nearest Unigene: | Hs.9196 |
| Nearest Refseq: | NM_016481 |
| Nearest Ensembl: | ENSG00000136932 |
| Gene Name: | tRNA methyltransferase O |
| Gene Alias: | C9orf156|HSPC219|NAP1 |
| Gene Description: | tRNA methyltransferase O |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
