Difference between revisions of "TSS:Hg 101643.1"
From referenceTSS
| Line 2: | Line 2: | ||
|HSPC219= | |HSPC219= | ||
|NAP1= | |NAP1= | ||
| − | |all_trans=ENST00000478126.5 | + | |all_trans=ENST00000478126.5:0 ENST00000471580.1:1 ENST00000455506.1:-10 ENST00000375117.8:-13 KJ898914:-16 CU678254:-16 DQ892983:-18 DQ896231:-18 ENST00000375119.8:-23 NM_001371657:-23 NM_001371658:-23 NM_016481:-23 NM_001330725:-23 NM_001371661:-23 NM_001371660:-23 ENST00000611338.4:-39 AY189280:-39 AF151053:-41 AK309270:-52 LF206453:-61 MA442030:-61 BC002863:-73 AK000213:-93 AK302701:-93 ENST00000660312.1:288 NM_001371659:288 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 11: | Line 11: | ||
|entrez_id=51531 | |entrez_id=51531 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=C9orf156 | + | |gene_alias=C9orf156{{!}}HSPC219{{!}}NAP1 |
|gene_description=tRNA methyltransferase O | |gene_description=tRNA methyltransferase O | ||
|gene_id=51531 | |gene_id=51531 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:30967 | |hgnc_mgi_id=HGNC:30967 | ||
|nearest_ensembl=ENSG00000136932 | |nearest_ensembl=ENSG00000136932 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016481 |
|nearest_refseq=NM_016481 | |nearest_refseq=NM_016481 | ||
|nearest_unigene=Hs.9196 | |nearest_unigene=Hs.9196 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=97922468 | |start=97922468 | ||
|start_of_center_position=97922472 | |start_of_center_position=97922472 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000478126.5 | + | |transcript_name=ENST00000478126.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101643.1 | |tss_id=hg_101643.1 | ||
Revision as of 16:45, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 97922472 |
|---|---|
| End of the center position in the TSS region: | 97922473 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000478126.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | ENST00000478126.5:0 ENST00000471580.1:1 ENST00000455506.1:-10 ENST00000375117.8:-13 KJ898914:-16 CU678254:-16 DQ892983:-18 DQ896231:-18 ENST00000375119.8:-23 NM_001371657:-23 NM_001371658:-23 NM_016481:-23 NM_001330725:-23 NM_001371661:-23 NM_001371660:-23 ENST00000611338.4:-39 AY189280:-39 AF151053:-41 AK309270:-52 LF206453:-61 MA442030:-61 BC002863:-73 AK000213:-93 AK302701:-93 ENST00000660312.1:288 NM_001371659:288 |
TATA-Box annotation
| Distance to TSS: | 97 |
|---|---|
| Nearest PromoterID: | NM_016481 |
| Entrez ID: | 51531 |
| Nearest Unigene: | Hs.9196 |
| Nearest Refseq: | NM_016481 |
| Nearest Ensembl: | ENSG00000136932 |
| Gene Name: | tRNA methyltransferase O |
| Gene Alias: | C9orf156|HSPC219|NAP1 |
| Gene Description: | tRNA methyltransferase O |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
