Difference between revisions of "TSS:Hg 101705.1"
From referenceTSS
| Line 4: | Line 4: | ||
|CMSTA3= | |CMSTA3= | ||
|NET38= | |NET38= | ||
| − | |all_trans=ENST00000238477.5:0 | + | |all_trans=ENST00000476832.2:0 ENST00000238477.5:0 NR_024532:0 NM_033087:0 AK074988:0 AB161356:0 AK075172:0 BC017876:0 AK027417:0 AK074704:0 DQ570480:0 KJ895084:5 DQ891989:7 DQ895179:7 CU676096:8 LF206456:-23 MA442033:-23 LF354592:290 MA590169:290 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=13 |
|end=99221955 | |end=99221955 | ||
|end_of_center_position=99221929 | |end_of_center_position=99221929 | ||
|entrez_id=85365 | |entrez_id=85365 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=CDG1I | + | |gene_alias=CDG1I{{!}}CDGIi{{!}}CMS14{{!}}CMSTA3{{!}}NET38{{!}}hALPG2 |
| − | |gene_description= | + | |gene_description=ALG2 alpha-1,3/1,6-mannosyltransferase |
|gene_id=85365 | |gene_id=85365 | ||
| − | |gene_name= | + | |gene_name=ALG2 alpha-1,3/1,6-mannosyltransferase |
|gene_source=HGNC:23159 | |gene_source=HGNC:23159 | ||
|gene_symbol=ALG2 | |gene_symbol=ALG2 | ||
| − | |gene_synonyms=CDGIi FLJ14511 NET38 hALPG2 | + | |gene_synonyms=CDG1I CDGIi FLJ14511 NET38 hALPG2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hALPG2= | |hALPG2= | ||
|hgnc_mgi_id=HGNC:23159 | |hgnc_mgi_id=HGNC:23159 | ||
|nearest_ensembl=ENSG00000119523 | |nearest_ensembl=ENSG00000119523 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_024532 |
|nearest_refseq=NM_033087 | |nearest_refseq=NM_033087 | ||
|nearest_unigene=Hs.40919 | |nearest_unigene=Hs.40919 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=99221902 | |start=99221902 | ||
|start_of_center_position=99221928 | |start_of_center_position=99221928 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000238477.5 | + | |transcript_name=ENST00000476832.2 ENST00000238477.5 NR_024532 NM_033087 AK074988 AB161356 AK075172 BC017876 AK027417 AK074704 DQ570480 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101705.1 | |tss_id=hg_101705.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A0A0MTE0 | + | |uniprot_id=A0A024R184 A0A0A0MTE0 Q9H553 |
}} | }} | ||
Revision as of 16:46, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 99221928 |
|---|---|
| End of the center position in the TSS region: | 99221929 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000476832.2 ENST00000238477.5 NR_024532 NM_033087 AK074988 AB161356 AK075172 BC017876 AK027417 AK074704 DQ570480 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000476832.2:0 ENST00000238477.5:0 NR_024532:0 NM_033087:0 AK074988:0 AB161356:0 AK075172:0 BC017876:0 AK027417:0 AK074704:0 DQ570480:0 KJ895084:5 DQ891989:7 DQ895179:7 CU676096:8 LF206456:-23 MA442033:-23 LF354592:290 MA590169:290 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NR_024532 |
| Entrez ID: | 85365 |
| Nearest Unigene: | Hs.40919 |
| Nearest Refseq: | NM_033087 |
| Nearest Ensembl: | ENSG00000119523 |
| Gene Name: | ALG2 alpha-1,3/1,6-mannosyltransferase |
| Gene Alias: | CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 |
| Gene Description: | ALG2 alpha-1,3/1,6-mannosyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
