Difference between revisions of "TSS:Hg 101802.1"
From referenceTSS
| Line 4: | Line 4: | ||
|HDLDT1= | |HDLDT1= | ||
|TGD= | |TGD= | ||
| + | |all_trans=LF354697:-321 MA590274:-321 LF354698:-469 MA590275:-469 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-321 |
| − | |distance_to_tss= | + | |distance_to_tss=21406 |
|end=104906751 | |end=104906751 | ||
|end_of_center_position=104906750 | |end_of_center_position=104906750 | ||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
| − | |gene_alias=ABC-1 | + | |gene_alias=ABC-1{{!}}ABC1{{!}}CERP{{!}}HDLDT1{{!}}TGD |
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
|gene_name=ABCA1 | |gene_name=ABCA1 | ||
| Line 20: | Line 21: | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=104906747 | |start=104906747 | ||
|start_of_center_position=104906749 | |start_of_center_position=104906749 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF354697 MA590274 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_101802.1 | |tss_id=hg_101802.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:48, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 104906749 |
|---|---|
| End of the center position in the TSS region: | 104906750 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF354697 MA590274 |
|---|---|
| Distance: | -321 |
| Num_trans: | 4 |
| All_trans: | LF354697:-321 MA590274:-321 LF354698:-469 MA590275:-469 |
TATA-Box annotation
| Distance to TSS: | 21406 |
|---|---|
| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ABCA1 |
| Gene Alias: | ABC-1|ABC1|CERP|HDLDT1|TGD |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
