Difference between revisions of "TSS:Hg 101807.1"
From referenceTSS
| Line 4: | Line 4: | ||
|HDLDT1= | |HDLDT1= | ||
|TGD= | |TGD= | ||
| − | |all_trans=AF285167:-19 ENST00000423487.6:-27 ENST00000374733.1 | + | |all_trans=LF354705:0 MA590282:0 AF285167:-19 ENST00000423487.6:-27 ENST00000374733.1:-27 BC034824:-27 BC141816:-33 BC142693:-33 AK022254:-41 ENST00000374736.8:-43 ENST00000678995.1:-43 NM_005502:-43 AK024328:-43 LF206462:-45 MA442039:-45 BC146856:46 LP895628:-125 AF258627:-125 LF354704:257 MA590281:257 LF354703:445 MA590280:445 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=48 |
|end=104928112 | |end=104928112 | ||
|end_of_center_position=104928107 | |end_of_center_position=104928107 | ||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=ABC-1 | + | |gene_alias=ABC-1{{!}}ABC1{{!}}CERP{{!}}HDLDT1{{!}}TGD |
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
|gene_id=19 | |gene_id=19 | ||
| − | |gene_name= | + | |gene_name=ABCA1 |
|gene_source=HGNC:29 | |gene_source=HGNC:29 | ||
|gene_symbol=ABCA1 | |gene_symbol=ABCA1 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=104928101 | |start=104928101 | ||
|start_of_center_position=104928106 | |start_of_center_position=104928106 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-82(ATCTATAAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF354705 MA590282 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101807.1 | |tss_id=hg_101807.1 | ||
Latest revision as of 16:48, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 104928106 |
|---|---|
| End of the center position in the TSS region: | 104928107 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF354705 MA590282 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | LF354705:0 MA590282:0 AF285167:-19 ENST00000423487.6:-27 ENST00000374733.1:-27 BC034824:-27 BC141816:-33 BC142693:-33 AK022254:-41 ENST00000374736.8:-43 ENST00000678995.1:-43 NM_005502:-43 AK024328:-43 LF206462:-45 MA442039:-45 BC146856:46 LP895628:-125 AF258627:-125 LF354704:257 MA590281:257 LF354703:445 MA590280:445 |
TATA-Box annotation
| Distance to TSS: | 48 |
|---|---|
| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ABCA1 |
| Gene Alias: | ABC-1|ABC1|CERP|HDLDT1|TGD |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -82(ATCTATAAAAGG,-,0.00) |
