Difference between revisions of "TSS:Hg 101808.1"
From referenceTSS
| Line 4: | Line 4: | ||
|HDLDT1= | |HDLDT1= | ||
|TGD= | |TGD= | ||
| − | |all_trans=AK024328:0 AK022254:0 BC141816:3 BC142693:3 ENST00000423487.6:9 ENST00000374733.1 | + | |all_trans=ENST00000374736.8:0 ENST00000678995.1:0 NM_005502:0 LF206462:0 MA442039:0 AK024328:0 AK022254:0 BC141816:3 BC142693:3 ENST00000423487.6:9 ENST00000374733.1:9 BC034824:9 AF285167:17 LF354705:43 MA590282:43 LP895628:-76 AF258627:-76 BC146856:92 LF354704:303 MA590281:303 LF354703:491 MA590280:491 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=104928161 | |end=104928161 | ||
|end_of_center_position=104928155 | |end_of_center_position=104928155 | ||
|entrez_id=19 | |entrez_id=19 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=ABC-1 | + | |gene_alias=ABC-1{{!}}ABC1{{!}}CERP{{!}}HDLDT1{{!}}TGD |
|gene_description=ATP binding cassette subfamily A member 1 | |gene_description=ATP binding cassette subfamily A member 1 | ||
|gene_id=19 | |gene_id=19 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_005502 | |nearest_refseq=NM_005502 | ||
|nearest_unigene=Hs.659274 | |nearest_unigene=Hs.659274 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=104928147 | |start=104928147 | ||
|start_of_center_position=104928154 | |start_of_center_position=104928154 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(ATCTATAAAAGG,-,0.00) |
| − | |transcript_name=AK024328 AK022254 | + | |transcript_name=ENST00000374736.8 ENST00000678995.1 NM_005502 LF206462 MA442039 AK024328 AK022254 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101808.1 | |tss_id=hg_101808.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O95477 |
}} | }} | ||
Revision as of 16:48, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 104928154 |
|---|---|
| End of the center position in the TSS region: | 104928155 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374736.8 ENST00000678995.1 NM_005502 LF206462 MA442039 AK024328 AK022254 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000374736.8:0 ENST00000678995.1:0 NM_005502:0 LF206462:0 MA442039:0 AK024328:0 AK022254:0 BC141816:3 BC142693:3 ENST00000423487.6:9 ENST00000374733.1:9 BC034824:9 AF285167:17 LF354705:43 MA590282:43 LP895628:-76 AF258627:-76 BC146856:92 LF354704:303 MA590281:303 LF354703:491 MA590280:491 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_005502 |
| Entrez ID: | 19 |
| Nearest Unigene: | Hs.659274 |
| Nearest Refseq: | NM_005502 |
| Nearest Ensembl: | ENSG00000165029 |
| Gene Name: | ATP binding cassette subfamily A member 1 |
| Gene Alias: | ABC-1|ABC1|CERP|HDLDT1|TGD |
| Gene Description: | ATP binding cassette subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(ATCTATAAAAGG,-,0.00) |
