Difference between revisions of "TSS:Hg 101871.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|CLLP= | |CLLP= | ||
| − | |all_trans=BC117208:-3 BC117234:-3 HQ258655:7 AB451283:9 AB451415:9 AF080071:-21 AF135021:-24 U97067:-24 AF006070:-24 AF030233:-26 AK314677:-38 AK223230:-39 AK022926:-39 ENST00000374593.4 | + | |all_trans=BC117208:-3 BC117234:-3 HQ258655:7 AB451283:9 AB451415:9 AF080071:-21 AF135021:-24 U97067:-24 AF006070:-24 AF030233:-26 AK314677:-38 ENST00000325551.9:-39 NM_003798:-39 NM_001286974:-39 AK223230:-39 AK022926:-39 ENST00000374593.4:-52 ENST00000374595.8:-62 AK022834:-69 LP895629:-69 |
|alpha-CATU= | |alpha-CATU= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
|distance=-3 | |distance=-3 | ||
| − | |distance_to_tss= | + | |distance_to_tss=44 |
|end=109013460 | |end=109013460 | ||
|end_of_center_position=109013456 | |end_of_center_position=109013456 | ||
|entrez_id=8727 | |entrez_id=8727 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=ACRP | + | |gene_alias=ACRP{{!}}CLLP{{!}}alpha-CATU |
|gene_description=catenin alpha like 1 | |gene_description=catenin alpha like 1 | ||
|gene_id=8727 | |gene_id=8727 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_003798 | |nearest_refseq=NM_003798 | ||
|nearest_unigene=Hs.58488 | |nearest_unigene=Hs.58488 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=109013450 | |start=109013450 | ||
Revision as of 16:50, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109013455 |
|---|---|
| End of the center position in the TSS region: | 109013456 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC117208 BC117234 |
|---|---|
| Distance: | -3 |
| Num_trans: | 20 |
| All_trans: | BC117208:-3 BC117234:-3 HQ258655:7 AB451283:9 AB451415:9 AF080071:-21 AF135021:-24 U97067:-24 AF006070:-24 AF030233:-26 AK314677:-38 ENST00000325551.9:-39 NM_003798:-39 NM_001286974:-39 AK223230:-39 AK022926:-39 ENST00000374593.4:-52 ENST00000374595.8:-62 AK022834:-69 LP895629:-69 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001286974 |
| Entrez ID: | 8727 |
| Nearest Unigene: | Hs.58488 |
| Nearest Refseq: | NM_003798 |
| Nearest Ensembl: | ENSG00000119326 |
| Gene Name: | catenin alpha like 1 |
| Gene Alias: | ACRP|CLLP|alpha-CATU |
| Gene Description: | catenin alpha like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
