Difference between revisions of "TSS:Hg 101873.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|CLLP= | |CLLP= | ||
| − | |all_trans=AF030233:1 AF135021:3 U97067:3 AF006070:3 AF080071:6 AK314677:-7 AK223230:-8 AK022926:-8 ENST00000374593.4 | + | |all_trans=AF030233:1 AF135021:3 U97067:3 AF006070:3 AF080071:6 AK314677:-7 ENST00000325551.9:-8 NM_003798:-8 NM_001286974:-8 AK223230:-8 AK022926:-8 ENST00000374593.4:-21 BC117208:24 BC117234:24 ENST00000374595.8:-31 AK022834:-38 LP895629:-38 HQ258655:43 AB451283:45 AB451415:45 |
|alpha-CATU= | |alpha-CATU= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=1 | |distance=1 | ||
| − | |distance_to_tss= | + | |distance_to_tss=10 |
|end=109013491 | |end=109013491 | ||
|end_of_center_position=109013489 | |end_of_center_position=109013489 | ||
|entrez_id=8727 | |entrez_id=8727 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
| − | |gene_alias=ACRP | + | |gene_alias=ACRP{{!}}CLLP{{!}}alpha-CATU |
|gene_description=catenin alpha like 1 | |gene_description=catenin alpha like 1 | ||
|gene_id=8727 | |gene_id=8727 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_003798 | |nearest_refseq=NM_003798 | ||
|nearest_unigene=Hs.58488 | |nearest_unigene=Hs.58488 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=109013486 | |start=109013486 | ||
Revision as of 16:50, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 109013488 |
|---|---|
| End of the center position in the TSS region: | 109013489 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF030233 |
|---|---|
| Distance: | 1 |
| Num_trans: | 20 |
| All_trans: | AF030233:1 AF135021:3 U97067:3 AF006070:3 AF080071:6 AK314677:-7 ENST00000325551.9:-8 NM_003798:-8 NM_001286974:-8 AK223230:-8 AK022926:-8 ENST00000374593.4:-21 BC117208:24 BC117234:24 ENST00000374595.8:-31 AK022834:-38 LP895629:-38 HQ258655:43 AB451283:45 AB451415:45 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001286974 |
| Entrez ID: | 8727 |
| Nearest Unigene: | Hs.58488 |
| Nearest Refseq: | NM_003798 |
| Nearest Ensembl: | ENSG00000119326 |
| Gene Name: | catenin alpha like 1 |
| Gene Alias: | ACRP|CLLP|alpha-CATU |
| Gene Description: | catenin alpha like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
