Difference between revisions of "TSS:Hg 101874.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|CLLP= | |CLLP= | ||
| − | |all_trans=ENST00000374595.8:0 ENST00000325551. | + | |all_trans=ENST00000374595.8:0 ENST00000325551.9:0 ENST00000374593.4:0 NM_003798:0 NM_001286974:0 AK022834:0 LP895629:0 AK223230:0 AK022926:0 AK314677:0 AF030233:7 AF135021:9 U97067:9 AF006070:9 AF080071:12 BC117208:30 BC117234:30 HQ258655:49 AB451283:51 AB451415:51 |
|alpha-CATU= | |alpha-CATU= | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-23 |
|end=109013551 | |end=109013551 | ||
|end_of_center_position=109013522 | |end_of_center_position=109013522 | ||
|entrez_id=8727 | |entrez_id=8727 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=ACRP | + | |gene_alias=ACRP{{!}}CLLP{{!}}alpha-CATU |
|gene_description=catenin alpha like 1 | |gene_description=catenin alpha like 1 | ||
|gene_id=8727 | |gene_id=8727 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:2512 | |hgnc_mgi_id=HGNC:2512 | ||
|nearest_ensembl=ENSG00000119326 | |nearest_ensembl=ENSG00000119326 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003798 |
|nearest_refseq=NM_003798 | |nearest_refseq=NM_003798 | ||
|nearest_unigene=Hs.58488 | |nearest_unigene=Hs.58488 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=109013492 | |start=109013492 | ||
|start_of_center_position=109013521 | |start_of_center_position=109013521 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000374595.8 ENST00000325551. | + | |transcript_name=ENST00000374595.8 ENST00000325551.9 ENST00000374593.4 NM_003798 NM_001286974 AK022834 LP895629 AK223230 AK022926 AK314677 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101874.1 | |tss_id=hg_101874.1 | ||
Revision as of 16:50, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109013521 |
|---|---|
| End of the center position in the TSS region: | 109013522 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374595.8 ENST00000325551.9 ENST00000374593.4 NM_003798 NM_001286974 AK022834 LP895629 AK223230 AK022926 AK314677 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000374595.8:0 ENST00000325551.9:0 ENST00000374593.4:0 NM_003798:0 NM_001286974:0 AK022834:0 LP895629:0 AK223230:0 AK022926:0 AK314677:0 AF030233:7 AF135021:9 U97067:9 AF006070:9 AF080071:12 BC117208:30 BC117234:30 HQ258655:49 AB451283:51 AB451415:51 |
TATA-Box annotation
| Distance to TSS: | -23 |
|---|---|
| Nearest PromoterID: | NM_003798 |
| Entrez ID: | 8727 |
| Nearest Unigene: | Hs.58488 |
| Nearest Refseq: | NM_003798 |
| Nearest Ensembl: | ENSG00000119326 |
| Gene Name: | catenin alpha like 1 |
| Gene Alias: | ACRP|CLLP|alpha-CATU |
| Gene Description: | catenin alpha like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
