Difference between revisions of "TSS:Hg 243033.1"
From referenceTSS
| Line 3: | Line 3: | ||
|SCRIB1= | |SCRIB1= | ||
|Vartul= | |Vartul= | ||
| − | |all_trans= | + | |all_trans=AF153416:-12 AF153418:-12 ENST00000374557.4:-238 NM_018424:-238 AB032179:-238 BC156131:280 ENST00000374566.8:-333 NM_001385623:-333 NM_019114:-333 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance=- | + | |distance=-12 |
| − | |distance_to_tss= | + | |distance_to_tss=464 |
|end=143815309 | |end=143815309 | ||
|end_of_center_position=109320726 | |end_of_center_position=109320726 | ||
|entrez_id=23513 | |entrez_id=23513 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=CRIB1 | + | |gene_alias=CRIB1{{!}}SCRB1{{!}}SCRIB1{{!}}Vartul |
| − | |gene_description= | + | |gene_description=scribble planar cell polarity protein |
| − | |gene_id= | + | |gene_id=54566 |
| − | |gene_name= | + | |gene_name=erythrocyte membrane protein band 4.1 like 4B |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:19818 |
| − | |gene_symbol= | + | |gene_symbol=EPB41L4B |
| − | |gene_synonyms= | + | |gene_synonyms=EHM2 LULU2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:19818 |
|nearest_ensembl=ENSG00000180900 | |nearest_ensembl=ENSG00000180900 | ||
|nearest_promoter_id=NM_182706 | |nearest_promoter_id=NM_182706 | ||
|nearest_refseq=NM_015356 | |nearest_refseq=NM_015356 | ||
|nearest_unigene=Hs.436329 | |nearest_unigene=Hs.436329 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=143815308 | |start=143815308 | ||
|start_of_center_position=109320725 | |start_of_center_position=109320725 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AF153416 AF153418 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243033.1 | |tss_id=hg_243033.1 | ||
Revision as of 16:29, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109320725 |
|---|---|
| End of the center position in the TSS region: | 109320726 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF153416 AF153418 |
|---|---|
| Distance: | -12 |
| Num_trans: | 9 |
| All_trans: | AF153416:-12 AF153418:-12 ENST00000374557.4:-238 NM_018424:-238 AB032179:-238 BC156131:280 ENST00000374566.8:-333 NM_001385623:-333 NM_019114:-333 |
TATA-Box annotation
| Distance to TSS: | 464 |
|---|---|
| Nearest PromoterID: | NM_182706 |
| Entrez ID: | 23513 |
| Nearest Unigene: | Hs.436329 |
| Nearest Refseq: | NM_015356 |
| Nearest Ensembl: | ENSG00000180900 |
| Gene Name: | erythrocyte membrane protein band 4.1 like 4B |
| Gene Alias: | CRIB1|SCRB1|SCRIB1|Vartul |
| Gene Description: | scribble planar cell polarity protein |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
