Difference between revisions of "TSS:Hg 101923.1"
From referenceTSS
| Line 2: | Line 2: | ||
|TRX= | |TRX= | ||
|TRX1= | |TRX1= | ||
| − | |all_trans=X77584:0 BC054866:0 BC003377:8 J04026:8 BX647247:-25 ENST00000374515.9 | + | |all_trans=ENST00000374517.6:0 NM_001244938:0 NM_003329:0 X77584:0 BC054866:0 HM005512:2 BC003377:8 J04026:8 BX647247:-25 ENST00000374515.9:34 D28376:-37 AK289508:-45 AF085844:53 AY004872:55 AF313911:55 AF276919:65 JQ313905:65 KJ897717:65 CR407665:65 AF065241:68 LP747439:-124 MB486579:-124 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-1 |
|end=110256516 | |end=110256516 | ||
|end_of_center_position=110256508 | |end_of_center_position=110256508 | ||
|entrez_id=7295 | |entrez_id=7295 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=TRDX | + | |gene_alias=TRDX{{!}}TRX{{!}}TRX1 |
|gene_description=thioredoxin | |gene_description=thioredoxin | ||
|gene_id=7295 | |gene_id=7295 | ||
| Line 17: | Line 17: | ||
|gene_source=HGNC:12435 | |gene_source=HGNC:12435 | ||
|gene_symbol=TXN | |gene_symbol=TXN | ||
| − | |gene_synonyms=TRX | + | |gene_synonyms=TRX Trx80 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:12435 | |hgnc_mgi_id=HGNC:12435 | ||
|nearest_ensembl=ENSG00000136810 | |nearest_ensembl=ENSG00000136810 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001244938 |
|nearest_refseq=NM_003329 | |nearest_refseq=NM_003329 | ||
|nearest_unigene=Hs.435136 | |nearest_unigene=Hs.435136 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=110256499 | |start=110256499 | ||
|start_of_center_position=110256507 | |start_of_center_position=110256507 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(CAGTTTATAAAG,-,0.00),-32(GTTTATAAAGGG,+,0.00),-32(GTTTATAAAGGG,-,0.00) |
| − | |transcript_name=X77584 BC054866 | + | |transcript_name=ENST00000374517.6 NM_001244938 NM_003329 X77584 BC054866 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101923.1 | |tss_id=hg_101923.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=H9ZYJ2 P10599 |
}} | }} | ||
Revision as of 16:51, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 110256507 |
|---|---|
| End of the center position in the TSS region: | 110256508 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374517.6 NM_001244938 NM_003329 X77584 BC054866 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000374517.6:0 NM_001244938:0 NM_003329:0 X77584:0 BC054866:0 HM005512:2 BC003377:8 J04026:8 BX647247:-25 ENST00000374515.9:34 D28376:-37 AK289508:-45 AF085844:53 AY004872:55 AF313911:55 AF276919:65 JQ313905:65 KJ897717:65 CR407665:65 AF065241:68 LP747439:-124 MB486579:-124 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001244938 |
| Entrez ID: | 7295 |
| Nearest Unigene: | Hs.435136 |
| Nearest Refseq: | NM_003329 |
| Nearest Ensembl: | ENSG00000136810 |
| Gene Name: | thioredoxin |
| Gene Alias: | TRDX|TRX|TRX1 |
| Gene Description: | thioredoxin |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CAGTTTATAAAG,-,0.00),-32(GTTTATAAAGGG,+,0.00),-32(GTTTATAAAGGG,-,0.00) |
