Difference between revisions of "TSS:Hg 102055.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000374270. | + | |all_trans=ENST00000374270.8:100 ENST00000374263.7:100 NM_001282640:100 NM_001282643:100 NM_022486:100 AK292868:100 ENST00000374264.6:130 BC060770:130 AY358746:132 ENST00000355396.7:212 AK056704:212 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=100 |
|distance_to_tss=-110 | |distance_to_tss=-110 | ||
|end=112175418 | |end=112175418 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:25413 | |hgnc_mgi_id=HGNC:25413 | ||
|nearest_ensembl=ENSG00000106868 | |nearest_ensembl=ENSG00000106868 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_022486 |
|nearest_refseq=NM_022486 | |nearest_refseq=NM_022486 | ||
|nearest_unigene=Hs.494827 | |nearest_unigene=Hs.494827 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=112175396 | |start=112175396 | ||
|start_of_center_position=112175407 | |start_of_center_position=112175407 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000374270.7 | + | |transcript_name=ENST00000374270.8 ENST00000374263.7 NM_001282640 NM_001282643 NM_022486 AK292868 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102055.1 | |tss_id=hg_102055.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q6UWL2 | + | |uniprot_id=F8WAQ1 Q6UWL2 |
}} | }} | ||
Revision as of 16:54, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 112175407 |
|---|---|
| End of the center position in the TSS region: | 112175408 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374270.8 ENST00000374263.7 NM_001282640 NM_001282643 NM_022486 AK292868 |
|---|---|
| Distance: | 100 |
| Num_trans: | 11 |
| All_trans: | ENST00000374270.8:100 ENST00000374263.7:100 NM_001282640:100 NM_001282643:100 NM_022486:100 AK292868:100 ENST00000374264.6:130 BC060770:130 AY358746:132 ENST00000355396.7:212 AK056704:212 |
TATA-Box annotation
| Distance to TSS: | -110 |
|---|---|
| Nearest PromoterID: | NM_022486 |
| Entrez ID: | 64420 |
| Nearest Unigene: | Hs.494827 |
| Nearest Refseq: | NM_022486 |
| Nearest Ensembl: | ENSG00000106868 |
| Gene Name: | sushi domain containing 1 |
| Gene Alias: | - |
| Gene Description: | sushi domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
