Difference between revisions of "TSS:Hg 102074.1"
From referenceTSS
| Line 4: | Line 4: | ||
|SOSSC= | |SOSSC= | ||
|SSBIP1= | |SSBIP1= | ||
| − | |all_trans=ENST00000497712.6:0 ENST00000481146.6:0 ENST00000374234.1:0 ENST00000476599.2:0 NM_021218:0 | + | |all_trans=ENST00000374242.9:0 ENST00000497712.6:0 ENST00000481146.6:0 ENST00000374234.1:0 ENST00000476599.2:0 NM_021218:0 NM_001329589:0 NR_138056:0 NM_001329590:0 NM_001329588:0 NM_001329587:0 NM_001329586:0 NM_001329585:0 NR_138054:0 NR_138055:0 BC014881:0 LF383873:0 MA619450:0 AK000637:0 BC065210:0 AF161409:0 AF161411:0 AK310007:0 ENST00000374236.5:-4 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=33 |
|end=112718145 | |end=112718145 | ||
|end_of_center_position=112718085 | |end_of_center_position=112718085 | ||
|entrez_id=58493 | |entrez_id=58493 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=C9orf80 | + | |gene_alias=C9orf80{{!}}HSPC043{{!}}MISE{{!}}SOSSC{{!}}SSBIP1{{!}}hSSBIP1 |
|gene_description=INTS3 and NABP interacting protein | |gene_description=INTS3 and NABP interacting protein | ||
|gene_id=58493 | |gene_id=58493 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:24994 | |hgnc_mgi_id=HGNC:24994 | ||
|nearest_ensembl=ENSG00000148153 | |nearest_ensembl=ENSG00000148153 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_138056 |
|nearest_refseq=NM_021218 | |nearest_refseq=NM_021218 | ||
|nearest_unigene=Hs.658575 | |nearest_unigene=Hs.658575 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=112718023 | |start=112718023 | ||
|start_of_center_position=112718084 | |start_of_center_position=112718084 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00) |
| − | |transcript_name=ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 NM_021218 | + | |transcript_name=ENST00000374242.9 ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 NM_021218 NM_001329589 NR_138056 NM_001329590 NM_001329588 NM_001329587 NM_001329586 NM_001329585 NR_138054 NR_138055 BC014881 LF383873 MA619450 AK000637 BC065210 AF161409 AF161411 AK310007 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102074.1 | |tss_id=hg_102074.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q5VWJ6 Q9NRY2 | + | |uniprot_id=Q5VWJ6 Q9NRY2 X6R8P6 |
}} | }} | ||
Revision as of 16:54, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 112718084 |
|---|---|
| End of the center position in the TSS region: | 112718085 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374242.9 ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 NM_021218 NM_001329589 NR_138056 NM_001329590 NM_001329588 NM_001329587 NM_001329586 NM_001329585 NR_138054 NR_138055 BC014881 LF383873 MA619450 AK000637 BC065210 AF161409 AF161411 AK310007 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000374242.9:0 ENST00000497712.6:0 ENST00000481146.6:0 ENST00000374234.1:0 ENST00000476599.2:0 NM_021218:0 NM_001329589:0 NR_138056:0 NM_001329590:0 NM_001329588:0 NM_001329587:0 NM_001329586:0 NM_001329585:0 NR_138054:0 NR_138055:0 BC014881:0 LF383873:0 MA619450:0 AK000637:0 BC065210:0 AF161409:0 AF161411:0 AK310007:0 ENST00000374236.5:-4 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NR_138056 |
| Entrez ID: | 58493 |
| Nearest Unigene: | Hs.658575 |
| Nearest Refseq: | NM_021218 |
| Nearest Ensembl: | ENSG00000148153 |
| Gene Name: | INTS3 and NABP interacting protein |
| Gene Alias: | C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 |
| Gene Description: | INTS3 and NABP interacting protein |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00) |
