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Difference between revisions of "TSS:Hg 6217.1"

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Line 2: Line 2:
 
|ADAMTS-4=
 
|ADAMTS-4=
 
|ADMP-1=
 
|ADMP-1=
−
|all_trans=ENST00000496133.5:0 uc057mpy.1:0 ENST00000479948.5:-306 uc057mpx.1:-306
+
|all_trans=ENST00000676653.1:0 ENST00000678507.1:0 ENST00000496133.5:0 ENST00000679064.1:0 ENST00000677383.1:0 ENST00000677579.1:0 ENST00000679215.1:0 ENST00000678793.1:0 ENST00000677178.1:0 ENST00000678052.1:0 ENST00000677138.1:0 ENST00000677457.1:0 ENST00000677613.1:0 ENST00000677925.1:0 ENST00000676535.1:0 ENST00000677547.1:0 ENST00000678613.1:0 ENST00000677231.1:0 ENST00000679282.1:0 ENST00000677081.1:0 ENST00000677350.1:0 ENST00000678605.1:0 ENST00000677809.1:0 ENST00000678966.1:0 ENST00000678911.1:0 ENST00000677807.1:0 ENST00000677846.1:0 ENST00000678492.1:0 NM_001377298:0 NM_001377300:0 ENST00000676600.1:-12 ENST00000677550.1:-38 ENST00000479948.5:-306
 
|chr=chr1
 
|chr=chr1
 
|cpg_percent=0.025
 
|cpg_percent=0.025
 
|distance=0
 
|distance=0
−
|distance_to_tss=1635
+
|distance_to_tss=1636
 
|end=161197426
 
|end=161197426
 
|end_of_center_position=161197418
 
|end_of_center_position=161197418
 
|entrez_id=9507
 
|entrez_id=9507
 
|gc_percent=0.606965
 
|gc_percent=0.606965
−
|gene_alias=ADAMTS-2
+
|gene_alias=ADAMTS-2{{!}}ADAMTS-4{{!}}ADMP-1
 
|gene_description=ADAM metallopeptidase with thrombospondin type 1 motif 4
 
|gene_description=ADAM metallopeptidase with thrombospondin type 1 motif 4
 
|gene_id=4720
 
|gene_id=4720
Line 21: Line 21:
 
|hgnc_mgi_id=HGNC:7708
 
|hgnc_mgi_id=HGNC:7708
 
|nearest_ensembl=ENSG00000158859
 
|nearest_ensembl=ENSG00000158859
−
|nearest_promoter_id=NM_005099
+
|nearest_promoter_id=NM_001320336
 
|nearest_refseq=NM_005099
 
|nearest_refseq=NM_005099
 
|nearest_unigene=Hs.211604
 
|nearest_unigene=Hs.211604
−
|num_trans=4
+
|num_trans=33
 
|species=human
 
|species=human
 
|start=161197409
 
|start=161197409
 
|start_of_center_position=161197417
 
|start_of_center_position=161197417
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000496133.5 uc057mpy.1
+
|transcript_name=ENST00000676653.1 ENST00000678507.1 ENST00000496133.5 ENST00000679064.1 ENST00000677383.1 ENST00000677579.1 ENST00000679215.1 ENST00000678793.1 ENST00000677178.1 ENST00000678052.1 ENST00000677138.1 ENST00000677457.1 ENST00000677613.1 ENST00000677925.1 ENST00000676535.1 ENST00000677547.1 ENST00000678613.1 ENST00000677231.1 ENST00000679282.1 ENST00000677081.1 ENST00000677350.1 ENST00000678605.1 ENST00000677809.1 ENST00000678966.1 ENST00000678911.1 ENST00000677807.1 ENST00000677846.1 ENST00000678492.1 NM_001377298 NM_001377300
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_6217.1
 
|tss_id=hg_6217.1

Revision as of 07:36, 18 June 2021

Basic information about the TSS

TSS ID:hg_6217.1
Species:human
Chr:chr1
TSS Classification:yes
Start:161197409
End:161197426
Strand:+
TSS Score:1
Start of the center position in the TSS region:161197417
End of the center position in the TSS region:161197418



Gene and protein annotation

Transcript_name:ENST00000676653.1 ENST00000678507.1 ENST00000496133.5 ENST00000679064.1 ENST00000677383.1 ENST00000677579.1 ENST00000679215.1 ENST00000678793.1 ENST00000677178.1 ENST00000678052.1 ENST00000677138.1 ENST00000677457.1 ENST00000677613.1 ENST00000677925.1 ENST00000676535.1 ENST00000677547.1 ENST00000678613.1 ENST00000677231.1 ENST00000679282.1 ENST00000677081.1 ENST00000677350.1 ENST00000678605.1 ENST00000677809.1 ENST00000678966.1 ENST00000678911.1 ENST00000677807.1 ENST00000677846.1 ENST00000678492.1 NM_001377298 NM_001377300
Distance:0
GeneID:4720
HGNC/MGI_ID:HGNC:7708
UniProt_ID:
Gene_name:NADH:ubiquinone oxidoreductase core subunit S2
Gene_symbol:NDUFS2
Gene_synonyms:CI-49
Gene_source:HGNC:7708



Transcript annotation

Transcript_name:ENST00000676653.1 ENST00000678507.1 ENST00000496133.5 ENST00000679064.1 ENST00000677383.1 ENST00000677579.1 ENST00000679215.1 ENST00000678793.1 ENST00000677178.1 ENST00000678052.1 ENST00000677138.1 ENST00000677457.1 ENST00000677613.1 ENST00000677925.1 ENST00000676535.1 ENST00000677547.1 ENST00000678613.1 ENST00000677231.1 ENST00000679282.1 ENST00000677081.1 ENST00000677350.1 ENST00000678605.1 ENST00000677809.1 ENST00000678966.1 ENST00000678911.1 ENST00000677807.1 ENST00000677846.1 ENST00000678492.1 NM_001377298 NM_001377300
Distance:0
Num_trans:33
All_trans:ENST00000676653.1:0 ENST00000678507.1:0 ENST00000496133.5:0 ENST00000679064.1:0 ENST00000677383.1:0 ENST00000677579.1:0 ENST00000679215.1:0 ENST00000678793.1:0 ENST00000677178.1:0 ENST00000678052.1:0 ENST00000677138.1:0 ENST00000677457.1:0 ENST00000677613.1:0 ENST00000677925.1:0 ENST00000676535.1:0 ENST00000677547.1:0 ENST00000678613.1:0 ENST00000677231.1:0 ENST00000679282.1:0 ENST00000677081.1:0 ENST00000677350.1:0 ENST00000678605.1:0 ENST00000677809.1:0 ENST00000678966.1:0 ENST00000678911.1:0 ENST00000677807.1:0 ENST00000677846.1:0 ENST00000678492.1:0 NM_001377298:0 NM_001377300:0 ENST00000676600.1:-12 ENST00000677550.1:-38 ENST00000479948.5:-306



TATA-Box annotation

Distance to TSS:1636
Nearest PromoterID:NM_001320336
Entrez ID:9507
Nearest Unigene:Hs.211604
Nearest Refseq:NM_005099
Nearest Ensembl:ENSG00000158859
Gene Name:NADH:ubiquinone oxidoreductase core subunit S2
Gene Alias:ADAMTS-2|ADAMTS-4|ADMP-1
Gene Description:ADAM metallopeptidase with thrombospondin type 1 motif 4
Gene Type:protein-coding
CpG%:0.025
GC%:0.606965
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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