Difference between revisions of "TSS:Hg 233277.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000392179.5:82 ENST00000678511.1:127 ENST00000677453.1:205 ENST00000467295.6:-207 ENST00000677736.1:222 ENST00000678328.1:222 ENST00000676583.1:222 ENST00000493849.6:222 ENST00000677657.1:222 ENST00000676726.1:222 ENST00000677916.1:222 ENST00000677495.1:222 ENST00000678484.1:222 ENST00000679239.1:222 ENST00000677050.1:222 ENST00000678850.1:222 ENST00000677653.1:222 ENST00000678783.1:222 ENST00000676871.1:222 ENST00000677577.1:222 ENST00000678982.1:249 ENST00000677063.1:249 ENST00000677045.1:249 ENST00000679218.1:284 ENST00000677837.1:300 ENST00000679169.1:300 ENST00000678880.1:300 ENST00000677745.1:300 ENST00000677358.1:300 ENST00000677089.1:300 ENST00000480762.6:300 ENST00000678532.1:300 ENST00000677643.1:300 ENST00000678648.1:300 ENST00000677336.1:300 ENST00000677471.1:300 ENST00000677948.1:300 ENST00000678068.1:302 ENST00000676972.1:302 NM_001166159:302 NM_001377299:302 NM_001377302:302 NR_165188:302 AK301641:302 ENST00000475570.1:307 ENST00000678559.1:307 ENST00000676795.1:307 AK315977:307 AK314807:309 ENST00000478866.5:311 ENST00000677103.1:314 BC000170:314 AF013160:315 AF050640:315 AK222618:316 AK309871:318 BC001456:320 DQ894087:321 Z36812:327 ENST00000679142.1:344 ENST00000496553.6:-384 ENST00000678130.1:-390 ENST00000676991.1:-399 ENST00000676770.1:411 ENST00000677033.1:469 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=82 |
|distance_to_tss=1419 | |distance_to_tss=1419 | ||
|end=16020 | |end=16020 | ||
|end_of_center_position=161202065 | |end_of_center_position=161202065 | ||
| − | |entrez_id= | + | |entrez_id=102466751 |
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=hsa-mir-6859- | + | |gene_alias=hsa-mir-6859-1 |
| − | |gene_description=microRNA 6859- | + | |gene_description=microRNA 6859-1 |
| − | |gene_id= | + | |gene_id=4720 |
| − | |gene_name= | + | |gene_name=NADH:ubiquinone oxidoreductase core subunit S2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:7708 |
| − | |gene_symbol= | + | |gene_symbol=NDUFS2 |
| − | |gene_synonyms= | + | |gene_synonyms=CI-49 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:7708 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000278267 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_106918 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_106918 |
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=65 |
|peakPage= | |peakPage= | ||
|species=human | |species=human | ||
| Line 29: | Line 29: | ||
|strand=- | |strand=- | ||
|tata_box=-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) | |tata_box=-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) | ||
| − | |transcript_name= | + | |transcript_name=ENST00000392179.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233277.1 | |tss_id=hg_233277.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O75306 |
}} | }} | ||
Revision as of 12:43, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 161202064 |
|---|---|
| End of the center position in the TSS region: | 161202065 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000392179.5 |
|---|---|
| Distance: | 82 |
| Num_trans: | 65 |
| All_trans: | ENST00000392179.5:82 ENST00000678511.1:127 ENST00000677453.1:205 ENST00000467295.6:-207 ENST00000677736.1:222 ENST00000678328.1:222 ENST00000676583.1:222 ENST00000493849.6:222 ENST00000677657.1:222 ENST00000676726.1:222 ENST00000677916.1:222 ENST00000677495.1:222 ENST00000678484.1:222 ENST00000679239.1:222 ENST00000677050.1:222 ENST00000678850.1:222 ENST00000677653.1:222 ENST00000678783.1:222 ENST00000676871.1:222 ENST00000677577.1:222 ENST00000678982.1:249 ENST00000677063.1:249 ENST00000677045.1:249 ENST00000679218.1:284 ENST00000677837.1:300 ENST00000679169.1:300 ENST00000678880.1:300 ENST00000677745.1:300 ENST00000677358.1:300 ENST00000677089.1:300 ENST00000480762.6:300 ENST00000678532.1:300 ENST00000677643.1:300 ENST00000678648.1:300 ENST00000677336.1:300 ENST00000677471.1:300 ENST00000677948.1:300 ENST00000678068.1:302 ENST00000676972.1:302 NM_001166159:302 NM_001377299:302 NM_001377302:302 NR_165188:302 AK301641:302 ENST00000475570.1:307 ENST00000678559.1:307 ENST00000676795.1:307 AK315977:307 AK314807:309 ENST00000478866.5:311 ENST00000677103.1:314 BC000170:314 AF013160:315 AF050640:315 AK222618:316 AK309871:318 BC001456:320 DQ894087:321 Z36812:327 ENST00000679142.1:344 ENST00000496553.6:-384 ENST00000678130.1:-390 ENST00000676991.1:-399 ENST00000676770.1:411 ENST00000677033.1:469 |
TATA-Box annotation
| Distance to TSS: | 1419 |
|---|---|
| Nearest PromoterID: | NR_106918 |
| Entrez ID: | 102466751 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106918 |
| Nearest Ensembl: | ENSG00000278267 |
| Gene Name: | NADH:ubiquinone oxidoreductase core subunit S2 |
| Gene Alias: | hsa-mir-6859-1 |
| Gene Description: | microRNA 6859-1 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
