Difference between revisions of "TSS:Hg 102295.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Cep215= | |Cep215= | ||
|MCPH3= | |MCPH3= | ||
| − | |all_trans=BC146782:-3 AB046853:-3 BC019577:-4 AF448860:6 BX537421:-18 | + | |all_trans=BC146782:-3 AB046853:-3 BC019577:-4 AF448860:6 BX537421:-18 ENST00000360190.8:-22 AL833481:-22 BX537759:-22 AK122913:-23 BX537708:-23 ENST00000349780.9:-31 NR_073555:-31 NM_001011649:-31 NR_073554:-31 NR_073557:-31 NR_073558:-31 NR_073556:-31 NM_018249:-31 ENST00000360822.7:-34 ENST00000491334.1:-34 NM_001272039:-34 KP294527:-34 ENST00000481266.1:65 ENST00000473282.6:121 ENST00000480112.5:121 BC136275:121 BC143732:121 BC143734:121 BC143755:121 BC143760:121 BC143762:121 BC143753:121 BC143764:121 AB489151:145 DQ581824:149 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=-3 | |distance=-3 | ||
| − | |distance_to_tss= | + | |distance_to_tss=36 |
|end=120580136 | |end=120580136 | ||
|end_of_center_position=120580131 | |end_of_center_position=120580131 | ||
|entrez_id=55755 | |entrez_id=55755 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=C48 | + | |gene_alias=C48{{!}}Cep215{{!}}MCPH3 |
|gene_description=CDK5 regulatory subunit associated protein 2 | |gene_description=CDK5 regulatory subunit associated protein 2 | ||
|gene_id=55755 | |gene_id=55755 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:18672 | |hgnc_mgi_id=HGNC:18672 | ||
|nearest_ensembl=ENSG00000136861 | |nearest_ensembl=ENSG00000136861 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_073557 |
|nearest_refseq=NM_018249 | |nearest_refseq=NM_018249 | ||
|nearest_unigene=Hs.269560 | |nearest_unigene=Hs.269560 | ||
| − | |num_trans= | + | |num_trans=35 |
|species=human | |species=human | ||
|start=120580125 | |start=120580125 | ||
Revision as of 17:00, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120580130 |
|---|---|
| End of the center position in the TSS region: | 120580131 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC146782 AB046853 |
|---|---|
| Distance: | -3 |
| Num_trans: | 35 |
| All_trans: | BC146782:-3 AB046853:-3 BC019577:-4 AF448860:6 BX537421:-18 ENST00000360190.8:-22 AL833481:-22 BX537759:-22 AK122913:-23 BX537708:-23 ENST00000349780.9:-31 NR_073555:-31 NM_001011649:-31 NR_073554:-31 NR_073557:-31 NR_073558:-31 NR_073556:-31 NM_018249:-31 ENST00000360822.7:-34 ENST00000491334.1:-34 NM_001272039:-34 KP294527:-34 ENST00000481266.1:65 ENST00000473282.6:121 ENST00000480112.5:121 BC136275:121 BC143732:121 BC143734:121 BC143755:121 BC143760:121 BC143762:121 BC143753:121 BC143764:121 AB489151:145 DQ581824:149 |
TATA-Box annotation
| Distance to TSS: | 36 |
|---|---|
| Nearest PromoterID: | NR_073557 |
| Entrez ID: | 55755 |
| Nearest Unigene: | Hs.269560 |
| Nearest Refseq: | NM_018249 |
| Nearest Ensembl: | ENSG00000136861 |
| Gene Name: | CDK5 regulatory subunit associated protein 2 |
| Gene Alias: | C48|Cep215|MCPH3 |
| Gene Description: | CDK5 regulatory subunit associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
