Difference between revisions of "TSS:Hg 102352.1"
From referenceTSS
| Line 2: | Line 2: | ||
|EPB7= | |EPB7= | ||
|EPB72= | |EPB72= | ||
| − | |all_trans=ENST00000347359.3:0 | + | |all_trans=ENST00000286713.7:0 ENST00000347359.3:0 NM_004099:0 NR_073037:0 NM_198194:0 NM_001270526:0 AK304518:0 AK304449:0 AK307999:0 AK302977:0 BC010703:10 M81635:31 LF205664:-42 MA441241:-42 ENST00000538954.5:-46 NM_001270527:-46 CU679799:47 DQ891058:48 KJ896772:48 DQ894236:48 AB528375:48 X60067:49 CR542100:49 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=121370258 | |end=121370258 | ||
|end_of_center_position=121370247 | |end_of_center_position=121370247 | ||
|entrez_id=2040 | |entrez_id=2040 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=BND7 | + | |gene_alias=BND7{{!}}EPB7{{!}}EPB72 |
|gene_description=stomatin | |gene_description=stomatin | ||
|gene_id=2040 | |gene_id=2040 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:3383 | |hgnc_mgi_id=HGNC:3383 | ||
|nearest_ensembl=ENSG00000148175 | |nearest_ensembl=ENSG00000148175 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_198194 |
|nearest_refseq=NM_004099 | |nearest_refseq=NM_004099 | ||
|nearest_unigene=Hs.253903 | |nearest_unigene=Hs.253903 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=121370235 | |start=121370235 | ||
|start_of_center_position=121370246 | |start_of_center_position=121370246 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000347359.3 | + | |transcript_name=ENST00000286713.7 ENST00000347359.3 NM_004099 NR_073037 NM_198194 NM_001270526 AK304518 AK304449 AK307999 AK302977 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102352.1 | |tss_id=hg_102352.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DZK8 B4E2V5 B4E310 P27105 | + | |uniprot_id=A0A024R882 B4DZK8 B4E2V5 B4E310 P27105 |
}} | }} | ||
Revision as of 17:01, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 121370246 |
|---|---|
| End of the center position in the TSS region: | 121370247 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000286713.7 ENST00000347359.3 NM_004099 NR_073037 NM_198194 NM_001270526 AK304518 AK304449 AK307999 AK302977 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000286713.7:0 ENST00000347359.3:0 NM_004099:0 NR_073037:0 NM_198194:0 NM_001270526:0 AK304518:0 AK304449:0 AK307999:0 AK302977:0 BC010703:10 M81635:31 LF205664:-42 MA441241:-42 ENST00000538954.5:-46 NM_001270527:-46 CU679799:47 DQ891058:48 KJ896772:48 DQ894236:48 AB528375:48 X60067:49 CR542100:49 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_198194 |
| Entrez ID: | 2040 |
| Nearest Unigene: | Hs.253903 |
| Nearest Refseq: | NM_004099 |
| Nearest Ensembl: | ENSG00000148175 |
| Gene Name: | stomatin |
| Gene Alias: | BND7|EPB7|EPB72 |
| Gene Description: | stomatin |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
