Difference between revisions of "TSS:Hg 102390.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000340587.7:0 | + | |all_trans=ENST00000340587.7:0 NM_014368:0 NM_199160:0 LF205667:-6 MA441244:-6 ENST00000394319.8:81 AK299709:81 LF211803:161 MA447380:161 AL136570:221 BC103936:255 BC103937:255 BC103938:255 NM_001242333:493 ENST00000560485.1:495 ENST00000541397.2:498 AK297175:498 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=11 |
|end=122228967 | |end=122228967 | ||
|end_of_center_position=122228947 | |end_of_center_position=122228947 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:21735 | |hgnc_mgi_id=HGNC:21735 | ||
|nearest_ensembl=ENSG00000106852 | |nearest_ensembl=ENSG00000106852 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_014368 |
|nearest_refseq=NM_014368 | |nearest_refseq=NM_014368 | ||
|nearest_unigene=Hs.103137 | |nearest_unigene=Hs.103137 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=122228946 | |start_of_center_position=122228946 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000340587.7 | + | |transcript_name=ENST00000340587.7 NM_014368 NM_199160 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102390.1 | |tss_id=hg_102390.1 | ||
Revision as of 17:02, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 122228946 |
|---|---|
| End of the center position in the TSS region: | 122228947 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000340587.7 NM_014368 NM_199160 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000340587.7:0 NM_014368:0 NM_199160:0 LF205667:-6 MA441244:-6 ENST00000394319.8:81 AK299709:81 LF211803:161 MA447380:161 AL136570:221 BC103936:255 BC103937:255 BC103938:255 NM_001242333:493 ENST00000560485.1:495 ENST00000541397.2:498 AK297175:498 |
TATA-Box annotation
| Distance to TSS: | 11 |
|---|---|
| Nearest PromoterID: | NM_014368 |
| Entrez ID: | 26468 |
| Nearest Unigene: | Hs.103137 |
| Nearest Refseq: | NM_014368 |
| Nearest Ensembl: | ENSG00000106852 |
| Gene Name: | LIM homeobox 6 |
| Gene Alias: | LHX6.1 |
| Gene Description: | LIM homeobox 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
