Difference between revisions of "TSS:Hg 102411.1"
From referenceTSS
| Line 2: | Line 2: | ||
|ILF3L= | |ILF3L= | ||
|SPNR= | |SPNR= | ||
| − | |all_trans=ENST00000348403. | + | |all_trans=ENST00000348403.10:0 ENST00000360998.3:0 ENST00000407982.6:0 NM_001376109:0 NR_033234:0 NM_018387:0 NM_001171137:0 NM_001376107:0 NM_001376106:0 GQ891469:0 BC017732:0 EU794683:0 AL136866:0 AL833947:0 AL834150:0 AK027890:0 BC108731:0 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=123268627 | |end=123268627 | ||
|end_of_center_position=123268583 | |end_of_center_position=123268583 | ||
|entrez_id=55342 | |entrez_id=55342 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=HEL162 | + | |gene_alias=HEL162{{!}}ILF3L{{!}}SPNR{{!}}p74 |
|gene_description=spermatid perinuclear RNA binding protein | |gene_description=spermatid perinuclear RNA binding protein | ||
|gene_id=55342 | |gene_id=55342 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:16462 | |hgnc_mgi_id=HGNC:16462 | ||
|nearest_ensembl=ENSG00000165209 | |nearest_ensembl=ENSG00000165209 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_018387 |
|nearest_refseq=NM_018387 | |nearest_refseq=NM_018387 | ||
|nearest_unigene=Hs.287659 | |nearest_unigene=Hs.287659 | ||
| − | |num_trans= | + | |num_trans=17 |
|p74= | |p74= | ||
|species=human | |species=human | ||
| Line 30: | Line 30: | ||
|start_of_center_position=123268582 | |start_of_center_position=123268582 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000348403. | + | |transcript_name=ENST00000348403.10 ENST00000360998.3 ENST00000407982.6 NM_001376109 NR_033234 NM_018387 NM_001171137 NM_001376107 NM_001376106 GQ891469 BC017732 EU794683 AL136866 AL833947 AL834150 AK027890 BC108731 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102411.1 | |tss_id=hg_102411.1 | ||
Revision as of 17:03, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 123268582 |
|---|---|
| End of the center position in the TSS region: | 123268583 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000348403.10 ENST00000360998.3 ENST00000407982.6 NM_001376109 NR_033234 NM_018387 NM_001171137 NM_001376107 NM_001376106 GQ891469 BC017732 EU794683 AL136866 AL833947 AL834150 AK027890 BC108731 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000348403.10:0 ENST00000360998.3:0 ENST00000407982.6:0 NM_001376109:0 NR_033234:0 NM_018387:0 NM_001171137:0 NM_001376107:0 NM_001376106:0 GQ891469:0 BC017732:0 EU794683:0 AL136866:0 AL833947:0 AL834150:0 AK027890:0 BC108731:0 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_018387 |
| Entrez ID: | 55342 |
| Nearest Unigene: | Hs.287659 |
| Nearest Refseq: | NM_018387 |
| Nearest Ensembl: | ENSG00000165209 |
| Gene Name: | spermatid perinuclear RNA binding protein |
| Gene Alias: | HEL162|ILF3L|SPNR|p74 |
| Gene Description: | spermatid perinuclear RNA binding protein |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
