Difference between revisions of "TSS:Hg 102447.1"
From referenceTSS
| Line 4: | Line 4: | ||
|NR61= | |NR61= | ||
|RTR= | |RTR= | ||
| − | |all_trans= | + | |all_trans=ENST00000344523.8:0 X99975:0 U80802:0 ENST00000373584.7:-3 AF004291:-3 S83309:-3 ENST00000416460.6:-16 BC030600:-16 BC042395:-16 BC042406:-16 ENST00000487099.7:-17 NM_033334:-17 NM_001489:-17 NM_001278546:-17 U64876:47 HQ692858:122 HQ709185:122 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=44 |
|end=124771294 | |end=124771294 | ||
|end_of_center_position=124771268 | |end_of_center_position=124771268 | ||
|entrez_id=2649 | |entrez_id=2649 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
| − | |gene_alias=CT150 | + | |gene_alias=CT150{{!}}GCNF{{!}}GCNF1{{!}}NR61{{!}}RTR{{!}}hGCNF{{!}}hRTR |
|gene_description=nuclear receptor subfamily 6 group A member 1 | |gene_description=nuclear receptor subfamily 6 group A member 1 | ||
|gene_id=2649 | |gene_id=2649 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:7985 | |hgnc_mgi_id=HGNC:7985 | ||
|nearest_ensembl=ENSG00000148200 | |nearest_ensembl=ENSG00000148200 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001278546 |
|nearest_refseq=NM_001489 | |nearest_refseq=NM_001489 | ||
|nearest_unigene=Hs.20131 | |nearest_unigene=Hs.20131 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=124771240 | |start=124771240 | ||
|start_of_center_position=124771267 | |start_of_center_position=124771267 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000344523.8 X99975 U80802 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_102447.1 | |tss_id=hg_102447.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q15406 |
}} | }} | ||
Revision as of 17:04, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 124771267 |
|---|---|
| End of the center position in the TSS region: | 124771268 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000344523.8 X99975 U80802 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000344523.8:0 X99975:0 U80802:0 ENST00000373584.7:-3 AF004291:-3 S83309:-3 ENST00000416460.6:-16 BC030600:-16 BC042395:-16 BC042406:-16 ENST00000487099.7:-17 NM_033334:-17 NM_001489:-17 NM_001278546:-17 U64876:47 HQ692858:122 HQ709185:122 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001278546 |
| Entrez ID: | 2649 |
| Nearest Unigene: | Hs.20131 |
| Nearest Refseq: | NM_001489 |
| Nearest Ensembl: | ENSG00000148200 |
| Gene Name: | nuclear receptor subfamily 6 group A member 1 |
| Gene Alias: | CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR |
| Gene Description: | nuclear receptor subfamily 6 group A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
